Literature DB >> 18345881

Adaptive minimum action method for the study of rare events.

Xiang Zhou1, Weiqing Ren, Weinan E.   

Abstract

An adaptive minimum action method is proposed for computing the most probable transition paths between stable equilibria in metastable systems that do not necessarily have an underlying energy function, by minimizing the action functional associated with such transition paths. This new algorithm uses the moving mesh strategy to adaptively adjust the grid points over the time interval of transition. Numerical examples are presented to demonstrate the efficiency of the adaptive minimum action method.

Year:  2008        PMID: 18345881     DOI: 10.1063/1.2830717

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  9 in total

1.  Landscape and kinetic path quantify critical transitions in epithelial-mesenchymal transition.

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Journal:  Biophys J       Date:  2021-09-02       Impact factor: 3.699

2.  Global view of bionetwork dynamics: adaptive landscape.

Authors:  Ping Ao
Journal:  J Genet Genomics       Date:  2009-02       Impact factor: 4.275

3.  Control of Stochastic and Induced Switching in Biophysical Networks.

Authors:  Daniel K Wells; William L Kath; Adilson E Motter
Journal:  Phys Rev X       Date:  2015-09-16       Impact factor: 15.762

4.  Comparative Normal Mode Analysis of the Dynamics of DENV and ZIKV Capsids.

Authors:  Yin-Chen Hsieh; Frédéric Poitevin; Marc Delarue; Patrice Koehl
Journal:  Front Mol Biosci       Date:  2016-12-27

5.  A landscape view on the interplay between EMT and cancer metastasis.

Authors:  Chunhe Li; Gabor Balazsi
Journal:  NPJ Syst Biol Appl       Date:  2018-08-23

6.  An enriched network motif family regulates multistep cell fate transitions with restricted reversibility.

Authors:  Yujie Ye; Xin Kang; Jordan Bailey; Chunhe Li; Tian Hong
Journal:  PLoS Comput Biol       Date:  2019-03-07       Impact factor: 4.475

7.  Landscape inferred from gene expression data governs pluripotency in embryonic stem cells.

Authors:  Xin Kang; Chunhe Li
Journal:  Comput Struct Biotechnol J       Date:  2020-02-15       Impact factor: 7.271

8.  Adaptive Landscape Shaped by Core Endogenous Network Coordinates Complex Early Progenitor Fate Commitments in Embryonic Pancreas.

Authors:  Junqiang Wang; Ruoshi Yuan; Xiaomei Zhu; Ping Ao
Journal:  Sci Rep       Date:  2020-01-24       Impact factor: 4.379

9.  Potential landscape of high dimensional nonlinear stochastic dynamics with large noise.

Authors:  Ying Tang; Ruoshi Yuan; Gaowei Wang; Xiaomei Zhu; Ping Ao
Journal:  Sci Rep       Date:  2017-11-17       Impact factor: 4.379

  9 in total

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