Literature DB >> 18342604

A sliding docking interaction is essential for sequential and processive phosphorylation of an SR protein by SRPK1.

Jacky Chi Ki Ngo1, Kayla Giang, Sutapa Chakrabarti, Chen-Ting Ma, Nhat Huynh, Jonathan C Hagopian, Pieter C Dorrestein, Xiang-Dong Fu, Joseph A Adams, Gourisankar Ghosh.   

Abstract

The 2.9 A crystal structure of the core SRPK1:ASF/SF2 complex reveals that the N-terminal half of the basic RS domain of ASF/SF2, which is destined to be phosphorylated, is bound to an acidic docking groove of SRPK1 distal to the active site. Phosphorylation of ASF/SF2 at a single site in the C-terminal end of the RS domain generates a primed phosphoserine that binds to a basic site in the kinase. Biochemical experiments support a directional sliding of the RS peptide through the docking groove to the active site during phosphorylation, which ends with the unfolding of a beta strand of the RRM domain and binding of the unfolded region to the docking groove. We further suggest that the priming of the first serine facilitates directional substrate translocation and efficient phosphorylation.

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Year:  2008        PMID: 18342604      PMCID: PMC2852395          DOI: 10.1016/j.molcel.2007.12.017

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  52 in total

1.  Electrostatics of nanosystems: application to microtubules and the ribosome.

Authors:  N A Baker; D Sept; S Joseph; M J Holst; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

2.  SR protein kinase 1 is resilient to inactivation.

Authors:  Jacky Chi Ki Ngo; Justin Gullingsrud; Kayla Giang; Melinda Jean Yeh; Xiang-Dong Fu; Joseph A Adams; J Andrew McCammon; Gourisankar Ghosh
Journal:  Structure       Date:  2007-01       Impact factor: 5.006

3.  Human splicing factor ASF/SF2 encodes for a repressor domain required for its inhibitory activity on pre-mRNA splicing.

Authors:  Vita Dauksaite; Göran Akusjärvi
Journal:  J Biol Chem       Date:  2002-01-18       Impact factor: 5.157

4.  Interplay between SRPK and Clk/Sty kinases in phosphorylation of the splicing factor ASF/SF2 is regulated by a docking motif in ASF/SF2.

Authors:  Jacky Chi Ki Ngo; Sutapa Chakrabarti; Jian-Hua Ding; Adolfo Velazquez-Dones; Brad Nolen; Brandon E Aubol; Joseph A Adams; Xiang-Dong Fu; Gourisankar Ghosh
Journal:  Mol Cell       Date:  2005-10-07       Impact factor: 17.970

Review 5.  The superfamily of arginine/serine-rich splicing factors.

Authors:  X D Fu
Journal:  RNA       Date:  1995-09       Impact factor: 4.942

6.  The gene encoding the splicing factor SF2/ASF is a proto-oncogene.

Authors:  Rotem Karni; Elisa de Stanchina; Scott W Lowe; Rahul Sinha; David Mu; Adrian R Krainer
Journal:  Nat Struct Mol Biol       Date:  2007-02-18       Impact factor: 15.369

7.  Processive phosphorylation of alternative splicing factor/splicing factor 2.

Authors:  Brandon E Aubol; Sutapa Chakrabarti; Jacky Ngo; Jennifer Shaffer; Brad Nolen; Xiang-Dong Fu; Gourisankar Ghosh; Joseph A Adams
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-10       Impact factor: 11.205

8.  Specific phosphorylation of SR proteins by mammalian DNA topoisomerase I.

Authors:  F Rossi; E Labourier; T Forné; G Divita; J Derancourt; J F Riou; E Antoine; G Cathala; C Brunel; J Tazi
Journal:  Nature       Date:  1996-05-02       Impact factor: 49.962

9.  A molecular link between SR protein dephosphorylation and mRNA export.

Authors:  Yingqun Huang; Therese A Yario; Joan A Steitz
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-21       Impact factor: 11.205

10.  Structural and functional analysis of RNA and TAP binding to SF2/ASF.

Authors:  Aura M Tintaru; Guillaume M Hautbergue; Andrea M Hounslow; Ming-Lung Hung; Lu-Yun Lian; C Jeremy Craven; Stuart A Wilson
Journal:  EMBO Rep       Date:  2007-07-13       Impact factor: 8.807

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  60 in total

1.  Acetylation and phosphorylation of SRSF2 control cell fate decision in response to cisplatin.

Authors:  Valerie Edmond; Elodie Moysan; Saadi Khochbin; Patrick Matthias; Christian Brambilla; Elisabeth Brambilla; Sylvie Gazzeri; Beatrice Eymin
Journal:  EMBO J       Date:  2010-12-14       Impact factor: 11.598

2.  Release of SR Proteins from CLK1 by SRPK1: A Symbiotic Kinase System for Phosphorylation Control of Pre-mRNA Splicing.

Authors:  Brandon E Aubol; Guowei Wu; Malik M Keshwani; Maliheh Movassat; Laurent Fattet; Klemens J Hertel; Xiang-Dong Fu; Joseph A Adams
Journal:  Mol Cell       Date:  2016-07-07       Impact factor: 17.970

3.  Disordered protein interactions for an ordered cellular transition: Cdc2-like kinase 1 is transported to the nucleus via its Ser-Arg protein substrate.

Authors:  Athira George; Brandon E Aubol; Laurent Fattet; Joseph A Adams
Journal:  J Biol Chem       Date:  2019-05-07       Impact factor: 5.157

4.  Regulation of SR protein phosphorylation and alternative splicing by modulating kinetic interactions of SRPK1 with molecular chaperones.

Authors:  Xiang-Yang Zhong; Jian-Hua Ding; Joseph A Adams; Gourisankar Ghosh; Xiang-Dong Fu
Journal:  Genes Dev       Date:  2009-02-15       Impact factor: 11.361

Review 5.  Structural mechanisms of RNA recognition: sequence-specific and non-specific RNA-binding proteins and the Cas9-RNA-DNA complex.

Authors:  Ting Ban; Jian-Kang Zhu; Karsten Melcher; H Eric Xu
Journal:  Cell Mol Life Sci       Date:  2014-11-29       Impact factor: 9.261

Review 6.  Phosphorylation mechanism and structure of serine-arginine protein kinases.

Authors:  Gourisankar Ghosh; Joseph A Adams
Journal:  FEBS J       Date:  2011-01-12       Impact factor: 5.542

7.  Atomic structure of the KEOPS complex: an ancient protein kinase-containing molecular machine.

Authors:  Daniel Y L Mao; Dante Neculai; Michael Downey; Stephen Orlicky; Yosr Z Haffani; Derek F Ceccarelli; Jenny S L Ho; Rachel K Szilard; Wei Zhang; Cynthia S Ho; Leo Wan; Christophe Fares; Sigrun Rumpel; Igor Kurinov; Cheryl H Arrowsmith; Daniel Durocher; Frank Sicheri
Journal:  Mol Cell       Date:  2008-10-24       Impact factor: 17.970

Review 8.  Regulation of splicing by SR proteins and SR protein-specific kinases.

Authors:  Zhihong Zhou; Xiang-Dong Fu
Journal:  Chromosoma       Date:  2013-03-24       Impact factor: 4.316

9.  Allosteric interactions direct binding and phosphorylation of ASF/SF2 by SRPK1.

Authors:  Nhat Huynh; Chen-Ting Ma; Ngoc Giang; Jonathan Hagopian; Jacky Ngo; Joseph Adams; Gourisankar Ghosh
Journal:  Biochemistry       Date:  2009-12-08       Impact factor: 3.162

10.  Partitioning RS domain phosphorylation in an SR protein through the CLK and SRPK protein kinases.

Authors:  Brandon E Aubol; Ryan M Plocinik; Jonathan C Hagopian; Chen-Ting Ma; Maria L McGlone; Reeti Bandyopadhyay; Xiang-Dong Fu; Joseph A Adams
Journal:  J Mol Biol       Date:  2013-05-23       Impact factor: 5.469

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