Literature DB >> 18341321

Glassy protein dynamics and gigantic solvent reorganization energy of plastocyanin.

David N LeBard1, Dmitry V Matyushov.   

Abstract

We report the results of molecular dynamics simulations of electron-transfer activation parameters of plastocyanin metalloprotein involved as an electron carrier in natural photosynthesis. We have discovered that slow, non-ergodic conformational fluctuations of the protein, coupled to hydrating water, result in a very broad distribution of donor-acceptor energy gaps far exceeding those observed for commonly studied inorganic and organic donor-acceptor complexes. The Stokes shift is not affected by these fluctuations and can be calculated from solvation models in terms of the linear response of the solvent dipolar polarization. The non-ergodic character of large-amplitude protein/water mobility breaks the strong link between the Stokes shift and the reorganization energy characteristic of equilibrium (ergodic) theories of electron transfer. This mechanism might be responsible for fast electronic transitions in natural electron-transfer proteins characterized by low reaction free energy.

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Year:  2008        PMID: 18341321     DOI: 10.1021/jp709586e

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  4 in total

1.  Nanosecond motions in proteins impose bounds on the timescale distributions of local dynamics.

Authors:  Osman Burak Okan; Ali Rana Atilgan; Canan Atilgan
Journal:  Biophys J       Date:  2009-10-07       Impact factor: 4.033

2.  The molecular determinants of the increased reduction potential of the rubredoxin domain of rubrerythrin relative to rubredoxin.

Authors:  Yan Luo; Can E Ergenekan; Justin T Fischer; Ming-Liang Tan; Toshiko Ichiye
Journal:  Biophys J       Date:  2010-02-17       Impact factor: 4.033

3.  Fundamental signatures of short- and long-range electron transfer for the blue copper protein azurin at Au/SAM junctions.

Authors:  Dimitri E Khoshtariya; Tina D Dolidze; Mikhael Shushanyan; Kathryn L Davis; David H Waldeck; Rudi van Eldik
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-01       Impact factor: 11.205

4.  Anomalous (Exergonic) Behavior in the Transfer of Electrons between Donors and Acceptors: Mobility, Energy, Caloric Capacity, and Entropy.

Authors:  Ana M Cabanas; Juan César Flores Araya; Ignacio A Jessop; Fernando Humire
Journal:  ACS Omega       Date:  2022-09-23
  4 in total

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