Literature DB >> 18334209

Mammalian DNA methyltransferases: a structural perspective.

Xiaodong Cheng1, Robert M Blumenthal.   

Abstract

The methylation of mammalian DNA, primarily at CpG dinucleotides, has long been recognized to play a major role in controlling gene expression, among other functions. Given their importance, it is surprising how many basic questions remain to be answered about the proteins responsible for this methylation and for coordination with the parallel chromatin-marking system that operates at the level of histone modification. This article reviews recent studies on, and discusses the resulting biochemical and structural insights into, the DNA nucleotide methyltransferase (Dnmt) proteins 1, 3a, 3a2, 3b, and 3L.

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Year:  2008        PMID: 18334209      PMCID: PMC2597194          DOI: 10.1016/j.str.2008.01.004

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  92 in total

Review 1.  Many paths to methyltransfer: a chronicle of convergence.

Authors:  Heidi L Schubert; Robert M Blumenthal; Xiaodong Cheng
Journal:  Trends Biochem Sci       Date:  2003-06       Impact factor: 13.807

2.  Essential role for de novo DNA methyltransferase Dnmt3a in paternal and maternal imprinting.

Authors:  Masahiro Kaneda; Masaki Okano; Kenichiro Hata; Takashi Sado; Naomi Tsujimoto; En Li; Hiroyuki Sasaki
Journal:  Nature       Date:  2004-06-24       Impact factor: 49.962

3.  Predicting aberrant CpG island methylation.

Authors:  F A Feltus; E K Lee; J F Costello; C Plass; P M Vertino
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-30       Impact factor: 11.205

4.  Suv39h-mediated histone H3 lysine 9 methylation directs DNA methylation to major satellite repeats at pericentric heterochromatin.

Authors:  Bernhard Lehnertz; Yoshihide Ueda; Alwin A H A Derijck; Ulrich Braunschweig; Laura Perez-Burgos; Stefan Kubicek; Taiping Chen; En Li; Thomas Jenuwein; Antoine H F M Peters
Journal:  Curr Biol       Date:  2003-07-15       Impact factor: 10.834

5.  DNMT3L stimulates the DNA methylation activity of Dnmt3a and Dnmt3b through a direct interaction.

Authors:  Isao Suetake; Fuminori Shinozaki; Junichi Miyagawa; Hideyuki Takeshima; Shoji Tajima
Journal:  J Biol Chem       Date:  2004-04-21       Impact factor: 5.157

6.  Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L.

Authors:  Déborah Bourc'his; Timothy H Bestor
Journal:  Nature       Date:  2004-08-18       Impact factor: 49.962

7.  Catalytic mechanism of DNA-(cytosine-C5)-methyltransferases revisited: covalent intermediate formation is not essential for methyl group transfer by the murine Dnmt3a enzyme.

Authors:  Sabine Reither; Fuyang Li; Humaira Gowher; Albert Jeltsch
Journal:  J Mol Biol       Date:  2003-06-13       Impact factor: 5.469

8.  Characterization of DNA demethylation in normal and cancerous cell lines and the regulatory role of cell cycle proteins in human DNA demethylase activity.

Authors:  Mariappan Vairapandi
Journal:  J Cell Biochem       Date:  2004-02-15       Impact factor: 4.429

9.  Np95 is a histone-binding protein endowed with ubiquitin ligase activity.

Authors:  Elisabetta Citterio; Roberto Papait; Francesco Nicassio; Manuela Vecchi; Paola Gomiero; Roberto Mantovani; Pier Paolo Di Fiore; Ian Marc Bonapace
Journal:  Mol Cell Biol       Date:  2004-03       Impact factor: 4.272

10.  Interactions within the mammalian DNA methyltransferase family.

Authors:  Jean B Margot; Ann E Ehrenhofer-Murray; Heinrich Leonhardt
Journal:  BMC Mol Biol       Date:  2003-05-30       Impact factor: 2.946

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  140 in total

1.  DNA methyltransferases1 (DNMT1) and 3a (DNMT3a) colocalize with GAD67-positive neurons in the GAD67-GFP mouse brain.

Authors:  Bashkim Kadriu; Alessandro Guidotti; Ying Chen; Dennis R Grayson
Journal:  J Comp Neurol       Date:  2012-06-15       Impact factor: 3.215

2.  DNA methylation: superior or subordinate in the epigenetic hierarchy?

Authors:  Bilian Jin; Yajun Li; Keith D Robertson
Journal:  Genes Cancer       Date:  2011-06

Review 3.  Conservation and divergence in eukaryotic DNA methylation.

Authors:  Tzuu-Fen Lee; Jixian Zhai; Blake C Meyers
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-10       Impact factor: 11.205

4.  The Dnmt3a PWWP domain reads histone 3 lysine 36 trimethylation and guides DNA methylation.

Authors:  Arunkumar Dhayalan; Arumugam Rajavelu; Philipp Rathert; Raluca Tamas; Renata Z Jurkowska; Sergey Ragozin; Albert Jeltsch
Journal:  J Biol Chem       Date:  2010-06-11       Impact factor: 5.157

Review 5.  HIV-1 transcription and latency: an update.

Authors:  Carine Van Lint; Sophie Bouchat; Alessandro Marcello
Journal:  Retrovirology       Date:  2013-06-26       Impact factor: 4.602

6.  Expression of DNA methyltransferases is influenced by growth hormone in the long-living Ames dwarf mouse in vivo and in vitro.

Authors:  Vanessa L Armstrong; Sharlene Rakoczy; Lalida Rojanathammanee; Holly M Brown-Borg
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2013-11-07       Impact factor: 6.053

7.  PRMT5-mediated methylation of histone H4R3 recruits DNMT3A, coupling histone and DNA methylation in gene silencing.

Authors:  Quan Zhao; Gerhard Rank; Yuen T Tan; Haitao Li; Robert L Moritz; Richard J Simpson; Loretta Cerruti; David J Curtis; Dinshaw J Patel; C David Allis; John M Cunningham; Stephen M Jane
Journal:  Nat Struct Mol Biol       Date:  2009-02-22       Impact factor: 15.369

8.  UHRF1, a modular multi-domain protein, regulates replication-coupled crosstalk between DNA methylation and histone modifications.

Authors:  Hideharu Hashimoto; John R Horton; Xing Zhang; Xiaodong Cheng
Journal:  Epigenetics       Date:  2009-01-10       Impact factor: 4.528

9.  The N-terminus of histone H3 is required for de novo DNA methylation in chromatin.

Authors:  Jia-Lei Hu; Bo O Zhou; Run-Rui Zhang; Kang-Ling Zhang; Jin-Qiu Zhou; Guo-Liang Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-14       Impact factor: 11.205

10.  Methionine Adenosyltransferase Engineering to Enable Bioorthogonal Platforms for AdoMet-Utilizing Enzymes.

Authors:  Tyler D Huber; Jonathan A Clinger; Yang Liu; Weijun Xu; Mitchell D Miller; George N Phillips; Jon S Thorson
Journal:  ACS Chem Biol       Date:  2020-03-03       Impact factor: 5.100

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