Literature DB >> 18332098

Sequencing-based genotyping and association analysis of the MICA and MICB genes in type 1 diabetes.

Sarah F Field1, Sergey Nejentsev, Neil M Walker, Joanna M M Howson, Lisa M Godfrey, Jennifer D Jolley, Matthew P A Hardy, John A Todd.   

Abstract

OBJECTIVE: The nonclassical major histocompatibility complex (MHC) class I chain-related molecules (MICs), encoded within the MHC, function in immunity. The transmembrane polymorphism in MICA (MICA-STR) has been reported to be associated with type 1 diabetes. In this study, we directly sequenced both of the highly polymorphic MIC genes (MICA and MICB) in order to establish whether they are associated with type 1 diabetes independently of the known type 1 diabetes MHC class II genes HLA-DRB1 and HLA-DQB1. RESEARCH DESIGN AND METHODS: We developed a sequencing-based typing method and genotyped MICA and MICB in 818 families (2,944 individuals) with type 1 diabetes from the U.K. and U.S. (constructing the genotype from single nucleotide polymorphisms in exons 2-4 of MICA and 2-5 of MICB) and additionally genotyped the MICA-STR in 2,023 type 1 diabetic case subjects and 1,748 control subjects from the U.K. We analyzed the association of the MICA and MICB alleles and genotypes with type 1 diabetes using regression methods.
RESULTS: We identified known MICA and MICB alleles and discovered four new MICB alleles. Based on this large-scale and detailed genotype data, we found no evidence for association of MICA and MICB with type 1 diabetes independently of the MHC class II genes (MICA P = 0.08, MICA-STR P = 0.76, MICB P = 0.03, after conditioning on HLA-DRB1 and HLA-DQB1).
CONCLUSIONS: Common MICA and MICB genetic variations including the MICA-STR are not associated, in a primary way, with susceptibility to type 1 diabetes.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18332098     DOI: 10.2337/db07-1402

Source DB:  PubMed          Journal:  Diabetes        ISSN: 0012-1797            Impact factor:   9.461


  11 in total

1.  A 265-base DNA sequencing read by capillary electrophoresis with no separation matrix.

Authors:  Jennifer Coyne Albrecht; Jennifer S Lin; Annelise E Barron
Journal:  Anal Chem       Date:  2010-12-23       Impact factor: 6.986

2.  Distribution of MICB diversity in the Zhejiang Han population: PCR sequence-based typing for exons 2-6 and identification of five novel MICB alleles.

Authors:  Yanling Ying; Yanmin He; Sudan Tao; Zhedong Han; Wei Wang; Nanying Chen; Junjun He; Wei Zhang; Ji He; Faming Zhu; Hangjun Lv
Journal:  Immunogenetics       Date:  2013-04-03       Impact factor: 2.846

3.  Soluble MICA is elevated in pancreatic cancer: Results from a population based case-control study.

Authors:  Guillaume Onyeaghala; Heather H Nelson; Bharat Thyagarajan; Amy M Linabery; Angela Panoskaltsis-Mortari; Myron Gross; Kristin E Anderson; Anna E Prizment
Journal:  Mol Carcinog       Date:  2017-05-24       Impact factor: 4.784

4.  Correlation of major histocompatibility complex class I related A (MICA) polymorphism with the risk of developing breast cancer.

Authors:  Sadeq Vallian; Morteza Javadi Rad; Mahmood Tavallaei; Manoochehr Tavassoli
Journal:  Med Oncol       Date:  2011-01-08       Impact factor: 3.064

5.  Approaches in type 1 diabetes research: A status report.

Authors:  Oindrila Raha; Subhankar Chowdhury; Samir Dasgupta; P Raychaudhuri; B N Sarkar; P Veer Raju; V R Rao
Journal:  Int J Diabetes Dev Ctries       Date:  2009-04

6.  Identification of the MICA*070 allele by sequencing and phasing.

Authors:  D Moran; S Morishima; M Malkki; E W Petersdorf
Journal:  Hum Immunol       Date:  2012-11-29       Impact factor: 2.850

7.  MICA, a gene contributing strong susceptibility to ankylosing spondylitis.

Authors:  Xiaodong Zhou; Jiucun Wang; Hejian Zou; Michael M Ward; Michael H Weisman; Maribel G Espitia; Xiangjun Xiao; Effie Petersdorf; Emmanuel Mignot; Javier Martin; Lianne S Gensler; Paul Scheet; John D Reveille
Journal:  Ann Rheum Dis       Date:  2013-06-01       Impact factor: 19.103

8.  Evidence that HLA class I and II associations with type 1 diabetes, autoantibodies to GAD and autoantibodies to IA-2, are distinct.

Authors:  Joanna M M Howson; Helen Stevens; Deborah J Smyth; Neil M Walker; Kyla A Chandler; Polly J Bingley; John A Todd
Journal:  Diabetes       Date:  2011-08-10       Impact factor: 9.461

9.  Protective human leucocyte antigen haplotype, HLA-DRB1*01-B*14, against chronic Chagas disease in Bolivia.

Authors:  Florencia del Puerto; Juan Eiki Nishizawa; Mihoko Kikuchi; Yelin Roca; Cinthia Avilas; Alberto Gianella; Javier Lora; Freddy Udalrico Gutierrez Velarde; Sachio Miura; Norihiro Komiya; Koji Maemura; Kenji Hirayama
Journal:  PLoS Negl Trop Dis       Date:  2012-03-20

Review 10.  New Insights Into the Regulation of Natural-Killer Group 2 Member D (NKG2D) and NKG2D-Ligands: Endoplasmic Reticulum Stress and CEA-Related Cell Adhesion Molecule 1.

Authors:  Shuhei Hosomi; Joep Grootjans; Yu-Hwa Huang; Arthur Kaser; Richard S Blumberg
Journal:  Front Immunol       Date:  2018-06-18       Impact factor: 7.561

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.