Literature DB >> 18331845

Molecular crowding effects on structure and stability of DNA.

Daisuke Miyoshi1, Naoki Sugimoto.   

Abstract

Living cells contain a variety of biomolecules including nucleic acids, proteins, polysaccharides, and metabolites as well as other soluble and insoluble components. These biomolecules occupy a significant fraction (20-40%) of the cellular volume. The total concentration of biomolecules reaches 400gL(-1), leading to a crowded intracellular environment referred to as molecular crowding. Therefore, an understanding of the effects of molecular crowding conditions on biomolecules is important to broad research fields such as biochemical, medical, and pharmaceutical sciences. In this review, we describe molecular conditions in the cytoplasm and nucleus, which are totally different from in vitro conditions, and then show the biochemical and biophysical consequences of molecular crowding. Finally, we discuss the effect of molecular crowding on the structure, stability, and function of nucleic acids and the significance of molecular crowding in biotechnology and nanotechnology.

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Year:  2008        PMID: 18331845     DOI: 10.1016/j.biochi.2008.02.009

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  63 in total

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2.  Identification of novel DNA-binding proteins using DNA-affinity chromatography/pull down.

Authors:  Brandon L Jutras; Ashutosh Verma; Brian Stevenson
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3.  Anomalous and heterogeneous DNA transport in biomimetic cytoskeleton networks.

Authors:  Jonathan Garamella; Kathryn Regan; Gina Aguirre; Ryan J McGorty; Rae M Robertson-Anderson
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Review 4.  Sizing up the nucleus: nuclear shape, size and nuclear-envelope assembly.

Authors:  Micah Webster; Keren L Witkin; Orna Cohen-Fix
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5.  RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries.

Authors:  Markus Hafner; Neil Renwick; Miguel Brown; Aleksandra Mihailović; Daniel Holoch; Carolina Lin; John T G Pena; Jeffrey D Nusbaum; Pavel Morozov; Janos Ludwig; Tolulope Ojo; Shujun Luo; Gary Schroth; Thomas Tuschl
Journal:  RNA       Date:  2011-07-20       Impact factor: 4.942

6.  Compaction of Single-Molecule Megabase-Long Chromatin under the Influence of Macromolecular Crowding.

Authors:  Anatoly Zinchenko; Nikolay V Berezhnoy; Qinming Chen; Lars Nordenskiöld
Journal:  Biophys J       Date:  2018-05-03       Impact factor: 4.033

7.  Crowding induces complex ergodic diffusion and dynamic elongation of large DNA molecules.

Authors:  Cole D Chapman; Stephanie Gorczyca; Rae M Robertson-Anderson
Journal:  Biophys J       Date:  2015-03-10       Impact factor: 4.033

8.  Two cationic porphyrin isomers showing different multimeric G-quadruplex recognition specificity against monomeric G-quadruplexes.

Authors:  Xiao-Xi Huang; Li-Na Zhu; Bin Wu; Yan-Fang Huo; Na-Na Duan; De-Ming Kong
Journal:  Nucleic Acids Res       Date:  2014-06-17       Impact factor: 16.971

9.  Agrobacterium aiming for the host chromatin: Host and bacterial proteins involved in interactions between T-DNA and plant nucleosomes.

Authors:  Benoît Lacroix; Vitaly Citovsky
Journal:  Commun Integr Biol       Date:  2009

10.  Arrangements of human telomere DNA quadruplex in physiologically relevant K+ solutions.

Authors:  D Renciuk; I Kejnovská; P Skoláková; K Bednárová; J Motlová; M Vorlícková
Journal:  Nucleic Acids Res       Date:  2009-08-28       Impact factor: 16.971

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