Literature DB >> 18330347

Assays for the rapid and specific identification of North American Yersinia pestis and the common laboratory strain CO92.

Amy J Vogler1, Elizabeth M Driebe, Judy Lee, Raymond K Auerbach, Christopher J Allender, Miles Stanley, Kristy Kubota, Gary L Andersen, Lyndsay Radnedge, Patricia L Worsham, Paul Keim, David M Wagner.   

Abstract

We present TaqMan-minor groove binding (MGB) assays for an SNP that separates the Yersinia pestis strain CO92 from all other strains and for another SNP that separates North American strains from all other global strains.

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Year:  2008        PMID： 18330347      PMCID： PMC3836605          DOI： 10.2144/000112815

Source DB:  PubMed          Journal:  Biotechniques        ISSN： 0736-6205            Impact factor:   1.993


  21 in total

1.  Identification and characterization of variable-number tandem repeats in the Yersinia pestis genome.

Authors:  A M Klevytska; L B Price; J M Schupp; P L Worsham; J Wong; P Keim
Journal:  J Clin Microbiol       Date:  2001-09       Impact factor: 5.948

2.  Multiple-locus variable-number tandem repeat analysis reveals genetic relationships within Bacillus anthracis.

Authors:  P Keim; L B Price; A M Klevytska; K L Smith; J M Schupp; R Okinaka; P J Jackson; M E Hugh-Jones
Journal:  J Bacteriol       Date:  2000-05       Impact factor: 3.490

3.  Genome sequence of Yersinia pestis, the causative agent of plague.

Authors:  J Parkhill; B W Wren; N R Thomson; R W Titball; M T Holden; M B Prentice; M Sebaihia; K D James; C Churcher; K L Mungall; S Baker; D Basham; S D Bentley; K Brooks; A M Cerdeño-Tárraga; T Chillingworth; A Cronin; R M Davies; P Davis; G Dougan; T Feltwell; N Hamlin; S Holroyd; K Jagels; A V Karlyshev; S Leather; S Moule; P C Oyston; M Quail; K Rutherford; M Simmonds; J Skelton; K Stevens; S Whitehead; B G Barrell
Journal:  Nature       Date:  2001-10-04       Impact factor: 49.962

4.  Genome sequence of Yersinia pestis KIM.

Authors:  Wen Deng; Valerie Burland; Guy Plunkett; Adam Boutin; George F Mayhew; Paul Liss; Nicole T Perna; Debra J Rose; Bob Mau; Shiguo Zhou; David C Schwartz; Jaqueline D Fetherston; Luther E Lindler; Robert R Brubaker; Gregory V Plano; Susan C Straley; Kathleen A McDonough; Matthew L Nilles; Jyl S Matson; Frederick R Blattner; Robert D Perry
Journal:  J Bacteriol       Date:  2002-08       Impact factor: 3.490

5.  Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosis.

Authors:  P S G Chain; E Carniel; F W Larimer; J Lamerdin; P O Stoutland; W M Regala; A M Georgescu; L M Vergez; M L Land; V L Motin; R R Brubaker; J Fowler; J Hinnebusch; M Marceau; C Medigue; M Simonet; V Chenal-Francisque; B Souza; D Dacheux; J M Elliott; A Derbise; L J Hauser; E Garcia
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-09       Impact factor: 11.205

Review 6.  Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales.

Authors:  Paul Keim; Matthew N Van Ert; Talima Pearson; Amy J Vogler; Lynn Y Huynh; David M Wagner
Journal:  Infect Genet Evol       Date:  2004-09       Impact factor: 3.342

7.  Differential plague-transmission dynamics determine Yersinia pestis population genetic structure on local, regional, and global scales.

Authors:  Jessica M Girard; David M Wagner; Amy J Vogler; Christine Keys; Christopher J Allender; Lee C Drickamer; Paul Keim
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-20       Impact factor: 11.205

8.  Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans.

Authors:  Yajun Song; Zongzhong Tong; Jin Wang; Li Wang; Zhaobiao Guo; Yanpin Han; Jianguo Zhang; Decui Pei; Dongsheng Zhou; Haiou Qin; Xin Pang; Yujun Han; Junhui Zhai; Min Li; Baizhong Cui; Zhizhen Qi; Lixia Jin; Ruixia Dai; Feng Chen; Shengting Li; Chen Ye; Zongmin Du; Wei Lin; Jun Wang; Jun Yu; Huanming Yang; Jian Wang; Peitang Huang; Ruifu Yang
Journal:  DNA Res       Date:  2004-06-30       Impact factor: 4.458

9.  A North American Yersinia pestis draft genome sequence: SNPs and phylogenetic analysis.

Authors:  Jeffrey W Touchman; David M Wagner; Jicheng Hao; Stephen D Mastrian; Maulik K Shah; Amy J Vogler; Christopher J Allender; Erin A Clark; Debbie S Benitez; David J Youngkin; Jessica M Girard; Raymond K Auerbach; Stephen M Beckstrom-Sternberg; Paul Keim
Journal:  PLoS One       Date:  2007-02-21       Impact factor: 3.240

10.  Global genetic population structure of Bacillus anthracis.

Authors:  Matthew N Van Ert; W Ryan Easterday; Lynn Y Huynh; Richard T Okinaka; Martin E Hugh-Jones; Jacques Ravel; Shaylan R Zanecki; Talima Pearson; Tatum S Simonson; Jana M U'Ren; Sergey M Kachur; Rebecca R Leadem-Dougherty; Shane D Rhoton; Guenevier Zinser; Jason Farlow; Pamala R Coker; Kimothy L Smith; Bingxiang Wang; Leo J Kenefic; Claire M Fraser-Liggett; David M Wagner; Paul Keim
Journal:  PLoS One       Date:  2007-05-23       Impact factor: 3.240
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  10 in total

1.  Identifying experimental surrogates for Bacillus anthracis spores: a review.

Authors:  David L Greenberg; Joseph D Busch; Paul Keim; David M Wagner
Journal:  Investig Genet       Date:  2010-09-01

2.  Rapid identification and typing of Yersinia pestis and other Yersinia species by matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry.

Authors:  Saravanan Ayyadurai; Christophe Flaudrops; Didier Raoult; Michel Drancourt
Journal:  BMC Microbiol       Date:  2010-11-12       Impact factor: 3.605

3.  Phylogeography of Francisella tularensis: global expansion of a highly fit clone.

Authors:  Amy J Vogler; Dawn Birdsell; Lance B Price; Jolene R Bowers; Stephen M Beckstrom-Sternberg; Raymond K Auerbach; James S Beckstrom-Sternberg; Anders Johansson; Ashley Clare; Jordan L Buchhagen; Jeannine M Petersen; Talima Pearson; Josée Vaissaire; Michael P Dempsey; Paul Foxall; David M Engelthaler; David M Wagner; Paul Keim
Journal:  J Bacteriol       Date:  2009-02-27       Impact factor: 3.490

4.  Development of a temperature-switch PCR-based SNP typing method for Mycobacterium ulcerans.

Authors:  Katharina Röltgen; Kobina Assan-Ampah; Emelia Danso; Dorothy Yeboah-Manu; Gerd Pluschke
Journal:  PLoS Negl Trop Dis       Date:  2012-11-15

5.  Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity.

Authors:  Giovanna Morelli; Yajun Song; Camila J Mazzoni; Mark Eppinger; Philippe Roumagnac; David M Wagner; Mirjam Feldkamp; Barica Kusecek; Amy J Vogler; Yanjun Li; Yujun Cui; Nicholas R Thomson; Thibaut Jombart; Raphael Leblois; Peter Lichtner; Lila Rahalison; Jeannine M Petersen; Francois Balloux; Paul Keim; Thierry Wirth; Jacques Ravel; Ruifu Yang; Elisabeth Carniel; Mark Achtman
Journal:  Nat Genet       Date:  2010-10-31       Impact factor: 38.330

6.  Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing.

Authors:  Craig A Cummings; Christina A Bormann Chung; Rixun Fang; Melissa Barker; Pius Brzoska; Phillip C Williamson; Jodi Beaudry; Molly Matthews; James Schupp; David M Wagner; Dawn Birdsell; Amy J Vogler; Manohar R Furtado; Paul Keim; Bruce Budowle
Journal:  Investig Genet       Date:  2010-09-01

7.  Phylogeography of Francisella tularensis subspecies holarctica from the country of Georgia.

Authors:  Gvantsa Chanturia; Dawn N Birdsell; Merab Kekelidze; Ekaterine Zhgenti; George Babuadze; Nikoloz Tsertsvadze; Shota Tsanava; Paata Imnadze; Stephen M Beckstrom-Sternberg; James S Beckstrom-Sternberg; Mia D Champion; Shripad Sinari; Miklos Gyuranecz; Jason Farlow; Amanda H Pettus; Emily L Kaufman; Joseph D Busch; Talima Pearson; Jeffrey T Foster; Amy J Vogler; David M Wagner; Paul Keim
Journal:  BMC Microbiol       Date:  2011-06-17       Impact factor: 3.605

8.  Melt analysis of mismatch amplification mutation assays (Melt-MAMA): a functional study of a cost-effective SNP genotyping assay in bacterial models.

Authors:  Dawn N Birdsell; Talima Pearson; Erin P Price; Heidie M Hornstra; Roxanne D Nera; Nathan Stone; Jeffrey Gruendike; Emily L Kaufman; Amanda H Pettus; Audriana N Hurbon; Jordan L Buchhagen; N Jane Harms; Gvantsa Chanturia; Miklos Gyuranecz; David M Wagner; Paul S Keim
Journal:  PLoS One       Date:  2012-03-16       Impact factor: 3.240

9.  TaqMan real-time PCR assays for single-nucleotide polymorphisms which identify Francisella tularensis and its subspecies and subpopulations.

Authors:  Dawn N Birdsell; Amy J Vogler; Jordan Buchhagen; Ashley Clare; Emily Kaufman; Amber Naumann; Elizabeth Driebe; David M Wagner; Paul S Keim
Journal:  PLoS One       Date:  2014-09-19       Impact factor: 3.240

10.  Variant site strain typer (VaST): efficient strain typing using a minimal number of variant genomic sites.

Authors:  Tara N Furstenau; Jill H Cocking; Jason W Sahl; Viacheslav Y Fofanov
Journal:  BMC Bioinformatics       Date:  2018-06-11       Impact factor: 3.169
  10 in total

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