Literature DB >> 18328690

The structure of protein evolution and the evolution of protein structure.

Richard A Goldstein1.   

Abstract

The observed distribution of protein structures can give us important clues about the underlying evolutionary process, imposing important constraints on possible models. The availability of results from an increasing number of genome projects has made the development of these models an active area of research. Models explaining the observed distribution of structures have focused on the inherent functional capabilities and structural properties of different folds and on the evolutionary dynamics. Increasingly, these elements are being combined.

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Year:  2008        PMID: 18328690     DOI: 10.1016/j.sbi.2008.01.006

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  42 in total

Review 1.  The interface of protein structure, protein biophysics, and molecular evolution.

Authors:  David A Liberles; Sarah A Teichmann; Ivet Bahar; Ugo Bastolla; Jesse Bloom; Erich Bornberg-Bauer; Lucy J Colwell; A P Jason de Koning; Nikolay V Dokholyan; Julian Echave; Arne Elofsson; Dietlind L Gerloff; Richard A Goldstein; Johan A Grahnen; Mark T Holder; Clemens Lakner; Nicholas Lartillot; Simon C Lovell; Gavin Naylor; Tina Perica; David D Pollock; Tal Pupko; Lynne Regan; Andrew Roger; Nimrod Rubinstein; Eugene Shakhnovich; Kimmen Sjölander; Shamil Sunyaev; Ashley I Teufel; Jeffrey L Thorne; Joseph W Thornton; Daniel M Weinreich; Simon Whelan
Journal:  Protein Sci       Date:  2012-04-23       Impact factor: 6.725

2.  Robustness versus evolvability: a paradigm revisited.

Authors:  Erich Bornberg-Bauer; Linus Kramer
Journal:  HFSP J       Date:  2010-05-07

3.  Detailed analysis of function divergence in a large and diverse domain superfamily: toward a refined protocol of function classification.

Authors:  Benoit H Dessailly; Oliver C Redfern; Alison L Cuff; Christine A Orengo
Journal:  Structure       Date:  2010-11-10       Impact factor: 5.006

Review 4.  Nothing about protein structure classification makes sense except in the light of evolution.

Authors:  Ruben E Valas; Song Yang; Philip E Bourne
Journal:  Curr Opin Struct Biol       Date:  2009-04-24       Impact factor: 6.809

5.  Characterizing the existing and potential structural space of proteins by large-scale multiple loop permutations.

Authors:  Liang Dai; Yaoqi Zhou
Journal:  J Mol Biol       Date:  2011-03-02       Impact factor: 5.469

6.  The FCS-like zinc finger scaffold of the kinase SnRK1 is formed by the coordinated actions of the FLZ domain and intrinsically disordered regions.

Authors:  Muhammed Jamsheer K; Brihaspati N Shukla; Sunita Jindal; Nandu Gopan; Chanchal Thomas Mannully; Ashverya Laxmi
Journal:  J Biol Chem       Date:  2018-06-26       Impact factor: 5.157

7.  Escape from Adaptive Conflict follows from weak functional trade-offs and mutational robustness.

Authors:  Tobias Sikosek; Hue Sun Chan; Erich Bornberg-Bauer
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-27       Impact factor: 11.205

8.  Biophysics of protein evolution and evolutionary protein biophysics.

Authors:  Tobias Sikosek; Hue Sun Chan
Journal:  J R Soc Interface       Date:  2014-11-06       Impact factor: 4.118

9.  The CATH hierarchy revisited-structural divergence in domain superfamilies and the continuity of fold space.

Authors:  Alison Cuff; Oliver C Redfern; Lesley Greene; Ian Sillitoe; Tony Lewis; Mark Dibley; Adam Reid; Frances Pearl; Tim Dallman; Annabel Todd; Richard Garratt; Janet Thornton; Christine Orengo
Journal:  Structure       Date:  2009-08-12       Impact factor: 5.006

Review 10.  Issues in bioinformatics benchmarking: the case study of multiple sequence alignment.

Authors:  Mohamed Radhouene Aniba; Olivier Poch; Julie D Thompson
Journal:  Nucleic Acids Res       Date:  2010-07-17       Impact factor: 16.971

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