Literature DB >> 18327644

Helitron mediated amplification of cytochrome P450 monooxygenase gene in maize.

Natalie Jameson1, Nikolaos Georgelis, Eric Fouladbash, Sara Martens, L Curtis Hannah, Shailesh Lal.   

Abstract

The mass movement of gene sequences by Helitrons has significantly contributed to the lack of gene collinearity reported between different maize inbred lines. However, Helitron captured-genes reported to date represent truncated versions of their progenitor genes. In this report, we provide evidence that maize CYP72A27-Zm gene represents a cytochrome P450 monooxygenase (P450) gene recently captured by a Helitron and transposed into an Opie-2 retroposon. The four exons of the CYP72A27 gene contained within the element contain a putative open reading frame (ORF) for 428 amino acid residues. We provide evidence that Helitron captured CYP72A27-Zm is transcribed. To identify the progenitor gene and the evolutionary time of capture, we searched the plant genome database and discovered other closely related CYP72A27-Zm genes in maize and grasses. Our analysis indicates that CYP72A27-Zm represents an almost complete copy of maize CYP72A26-Zm gene captured by a Helitron about 3.1 million years ago (mya). The Helitron-captured gene then duplicated twice, approximately 1.5-1.6 mya giving rise to CYP72A36-Zm and CYP72A37-Zm. These data provide evidence that Helitrons can capture and mobilize intact genes that are transcribed and potentially encode biologically relevant proteins.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18327644     DOI: 10.1007/s11103-008-9318-4

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  36 in total

1.  Gene structure prediction by spliced alignment of genomic DNA with protein sequences: increased accuracy by differential splice site scoring.

Authors:  J Usuka; V Brendel
Journal:  J Mol Biol       Date:  2000-04-14       Impact factor: 5.469

Review 2.  The outs and ins of transposition: from mu to kangaroo.

Authors:  M Joan Curcio; Keith M Derbyshire
Journal:  Nat Rev Mol Cell Biol       Date:  2003-11       Impact factor: 94.444

3.  The maize genome contains a helitron insertion.

Authors:  Shailesh K Lal; Michael J Giroux; Volker Brendel; C Eduardo Vallejos; L Curtis Hannah
Journal:  Plant Cell       Date:  2003-02       Impact factor: 11.277

Review 4.  Functional genomics of P450s.

Authors:  Mary A Schuler; Daniele Werck-Reichhart
Journal:  Annu Rev Plant Biol       Date:  2003       Impact factor: 26.379

5.  Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize.

Authors:  Michele Morgante; Stephan Brunner; Giorgio Pea; Kevin Fengler; Andrea Zuccolo; Antoni Rafalski
Journal:  Nat Genet       Date:  2005-07-31       Impact factor: 38.330

6.  The paleontology of intergene retrotransposons of maize.

Authors:  P SanMiguel; B S Gaut; A Tikhonov; Y Nakajima; J L Bennetzen
Journal:  Nat Genet       Date:  1998-09       Impact factor: 38.330

7.  Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites.

Authors:  X Gu; Y X Fu; W H Li
Journal:  Mol Biol Evol       Date:  1995-07       Impact factor: 16.240

8.  Estimating the pattern of nucleotide substitution.

Authors:  Z Yang
Journal:  J Mol Evol       Date:  1994-07       Impact factor: 2.395

9.  Characterization of a highly conserved sequence related to mutator transposable elements in maize.

Authors:  L E Talbert; V L Chandler
Journal:  Mol Biol Evol       Date:  1988-09       Impact factor: 16.240

10.  Pack-MULE transposable elements mediate gene evolution in plants.

Authors:  Ning Jiang; Zhirong Bao; Xiaoyu Zhang; Sean R Eddy; Susan R Wessler
Journal:  Nature       Date:  2004-09-30       Impact factor: 49.962

View more
  14 in total

1.  Distribution, diversity, evolution, and survival of Helitrons in the maize genome.

Authors:  Lixing Yang; Jeffrey L Bennetzen
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-19       Impact factor: 11.205

2.  Pervasive horizontal transfer of rolling-circle transposons among animals.

Authors:  Jainy Thomas; Sarah Schaack; Ellen J Pritham
Journal:  Genome Biol Evol       Date:  2010-08-06       Impact factor: 3.416

3.  The polychromatic Helitron landscape of the maize genome.

Authors:  Chunguang Du; Nadezhda Fefelova; Jason Caronna; Limei He; Hugo K Dooner
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-19       Impact factor: 11.205

4.  Gene capture by Helitron transposons reshuffles the transcriptome of maize.

Authors:  Allison M Barbaglia; Katarina M Klusman; John Higgins; Janine R Shaw; L Curtis Hannah; Shailesh K Lal
Journal:  Genetics       Date:  2011-12-14       Impact factor: 4.562

5.  Structural characterization of helitrons and their stepwise capturing of gene fragments in the maize genome.

Authors:  Yongbin Dong; Xiaomin Lu; Weibin Song; Lei Shi; Mei Zhang; Hainan Zhao; Yinping Jiao; Jinsheng Lai
Journal:  BMC Genomics       Date:  2011-12-17       Impact factor: 3.969

6.  The multiple fates of gene duplications: Deletion, hypofunctionalization, subfunctionalization, neofunctionalization, dosage balance constraints, and neutral variation.

Authors:  James A Birchler; Hua Yang
Journal:  Plant Cell       Date:  2022-07-04       Impact factor: 12.085

7.  Differential pre-mRNA Splicing Alters the Transcript Diversity of Helitrons Between the Maize Inbred Lines.

Authors:  Brian T Lynch; Tara L Patrick; Jennifer J Moreno; Amy E Siebert; Katarina M Klusman; Donya N Shodja; L Curtis Hannah; Shailesh K Lal
Journal:  G3 (Bethesda)       Date:  2015-06-12       Impact factor: 3.154

8.  Targeted isolation, sequence assembly and characterization of two white spruce (Picea glauca) BAC clones for terpenoid synthase and cytochrome P450 genes involved in conifer defence reveal insights into a conifer genome.

Authors:  Björn Hamberger; Dawn Hall; Mack Yuen; Claire Oddy; Britta Hamberger; Christopher I Keeling; Carol Ritland; Kermit Ritland; Jörg Bohlmann
Journal:  BMC Plant Biol       Date:  2009-08-06       Impact factor: 4.215

9.  Fragments of the key flowering gene GIGANTEA are associated with helitron-type sequences in the Pooideae grass Lolium perenne.

Authors:  Tim Langdon; Ann Thomas; Lin Huang; Kerrie Farrar; Julie King; Ian Armstead
Journal:  BMC Plant Biol       Date:  2009-06-07       Impact factor: 4.215

10.  Transposable elements: powerful contributors to angiosperm evolution and diversity.

Authors:  Keith R Oliver; Jen A McComb; Wayne K Greene
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.