Literature DB >> 18327555

Cells by design: a mini-review of targeting cell engineering using DNA microarrays.

Pratik Jaluria1, Chia Chu, Michael Betenbaugh, Joseph Shiloach.   

Abstract

Recent studies have demonstrated the utility of DNA microarray technology in engineering cellular properties. For instance, cellular adhesion, the necessity of cells to attach to a surface in order to to proliferate, was examined by comparing two distinct HeLa cell lines. Two genes, one encoding a type II membrane glycosylating sialyltransferase (siat7e) and the other encoding a secreted glycoprotein (lama4), were found to influence adhesion. The expression of siat7e correlated with reduced adhesion, whereas expression of lama4 correlated with increased adhesion, as shown by various assays. In a separate example, a gene encoding a mitochondrial assembly protein (cox15) and a gene encoding a kinase (cdkl3), were found to influence cellular growth. Enhanced expression of either gene resulted in slightly higher specific growth rates and higher maximum cell densities for HeLa, HEK-293, and CHO cell lines. Another investigated property was the adaptation of HEK-293 cells to serum-free media. The genes egr1 and gas6, both with anti-apoptotic properties, were identified as potentially improving adaptability by impacting viability at low serum levels. In trying to control apoptosis, researchers found that by altering the expression levels of four genes faim, fadd, alg-2, and requiem, apoptotic response could be altered. In the present work, these and related studies in microorganisms (prokaryote and eukaryote) are examined in greater detail focusing on the approach of using DNA microarrays to direct cellular behavior by targeting select genes.

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Year:  2008        PMID: 18327555     DOI: 10.1007/s12033-008-9048-5

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  27 in total

Review 1.  Computational analysis of microarray data.

Authors:  J Quackenbush
Journal:  Nat Rev Genet       Date:  2001-06       Impact factor: 53.242

2.  Inverse metabolic engineering: a strategy for directed genetic engineering of useful phenotypes.

Authors:  James E Bailey; Adriana Sburlati; Vassily Hatzimanikatis; Kelvin Lee; Wolfgang A Renner; Philip S Tsai
Journal:  Biotechnol Bioeng       Date:  2002-09-05       Impact factor: 4.530

Review 3.  Enabling inverse metabolic engineering through genomics.

Authors:  Ryan T Gill
Journal:  Curr Opin Biotechnol       Date:  2003-10       Impact factor: 9.740

Review 4.  Links between metabolism and apoptosis in mammalian cells: applications for anti-apoptosis engineering.

Authors:  Brian S Majors; Michael J Betenbaugh; Gisela G Chiang
Journal:  Metab Eng       Date:  2007-05-23       Impact factor: 9.783

5.  Quantitative monitoring of gene expression patterns with a complementary DNA microarray.

Authors:  M Schena; D Shalon; R W Davis; P O Brown
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

6.  Egr1 and Gas6 facilitate the adaptation of HEK-293 cells to serum-free media by conferring enhanced viability and higher growth rates.

Authors:  Pratik Jaluria; Konstantinos Konstantopoulos; Michael Betenbaugh; Joseph Shiloach
Journal:  Biotechnol Bioeng       Date:  2008-04-15       Impact factor: 4.530

7.  Apoptosis in batch cultures of Chinese hamster ovary cells.

Authors:  J Goswami; A J Sinskey; H Steller; G N Stephanopoulos; D I Wang
Journal:  Biotechnol Bioeng       Date:  1999-03-20       Impact factor: 4.530

8.  Improving lysine production by Corynebacterium glutamicum through DNA microarray-based identification of novel target genes.

Authors:  Georg Sindelar; Volker F Wendisch
Journal:  Appl Microbiol Biotechnol       Date:  2007-03-16       Impact factor: 4.813

Review 9.  Advancing mammalian cell culture engineering using genome-scale technologies.

Authors:  Timothy J Griffin; Gargi Seth; Hongwei Xie; Sricharan Bandhakavi; Wei-Shou Hu
Journal:  Trends Biotechnol       Date:  2007-08-02       Impact factor: 19.536

10.  Identification of target genes conferring ethanol stress tolerance to Saccharomyces cerevisiae based on DNA microarray data analysis.

Authors:  Takashi Hirasawa; Katsunori Yoshikawa; Yuki Nakakura; Keisuke Nagahisa; Chikara Furusawa; Yoshio Katakura; Hiroshi Shimizu; Suteaki Shioya
Journal:  J Biotechnol       Date:  2007-05-24       Impact factor: 3.307

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  4 in total

1.  Evaluation of the cell viability of human Wharton's jelly stem cells for use in cell therapy.

Authors:  Ingrid Garzón; Barbara Pérez-Köhler; Juan Garrido-Gómez; Victor Carriel; Renato Nieto-Aguilar; Miguel Angel Martín-Piedra; Natalio García-Honduvilla; Julia Buján; Antonio Campos; Miguel Alaminos
Journal:  Tissue Eng Part C Methods       Date:  2012-01-26       Impact factor: 3.056

2.  Effect of LAMA4 on Prognosis and Its Correlation with Immune Infiltration in Gastric Cancer.

Authors:  Mingming Wang; Changzheng Li; Ying Liu; Zuomin Wang
Journal:  Biomed Res Int       Date:  2021-08-09       Impact factor: 3.411

Review 3.  The progress of early growth response factor 1 and leukemia.

Authors:  Jing Tian; Ziwei Li; Yang Han; Tao Jiang; Xiaoming Song; Guosheng Jiang
Journal:  Intractable Rare Dis Res       Date:  2016-05

4.  Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli.

Authors:  Adam M Feist; Daniel C Zielinski; Jeffrey D Orth; Jan Schellenberger; Markus J Herrgard; Bernhard Ø Palsson
Journal:  Metab Eng       Date:  2009-10-17       Impact factor: 9.783

  4 in total

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