Literature DB >> 18327232

BLOSUM62 miscalculations improve search performance.

Mark P Styczynski, Kyle L Jensen, Isidore Rigoutsos, Gregory Stephanopoulos.   

Abstract

Mesh：

Year:  2008        PMID： 18327232     DOI： 10.1038/nbt0308-274

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  33 in total

1.  Evolutionary constraints on structural similarity in orthologs and paralogs.

Authors:  Mark E Peterson; Feng Chen; Jeffery G Saven; David S Roos; Patricia C Babbitt; Andrej Sali
Journal:  Protein Sci       Date:  2009-06       Impact factor: 6.725

2.  An HER2 DNA vaccine with evolution-selected amino acid substitutions reveals a fundamental principle for cancer vaccine formulation in HER2 transgenic mice.

Authors:  Richard F Jones; Joyce D Reyes; Heather M Gibson; Jennifer B Jacob; Ulka Vaishampayan; Stuart Ratner; Kang Chen; Wei-Zen Wei
Journal:  Cancer Immunol Immunother       Date:  2019-06-08       Impact factor: 6.968

3.  ScaffoldSeq: Software for characterization of directed evolution populations.

Authors:  Daniel R Woldring; Patrick V Holec; Benjamin J Hackel
Journal:  Proteins       Date:  2016-04-16

4.  PSSMHCpan: a novel PSSM-based software for predicting class I peptide-HLA binding affinity.

Authors:  Geng Liu; Dongli Li; Zhang Li; Si Qiu; Wenhui Li; Cheng-Chi Chao; Naibo Yang; Handong Li; Zhen Cheng; Xin Song; Le Cheng; Xiuqing Zhang; Jian Wang; Huanming Yang; Kun Ma; Yong Hou; Bo Li
Journal:  Gigascience       Date:  2017-05-01       Impact factor: 6.524

5.  Optimal neighborhood indexing for protein similarity search.

Authors:  Pierre Peterlongo; Laurent Noé; Dominique Lavenier; Van Hoa Nguyen; Gregory Kucherov; Mathieu Giraud
Journal:  BMC Bioinformatics       Date:  2008-12-16       Impact factor: 3.169

6.  Accurate single-sequence prediction of solvent accessible surface area using local and global features.

Authors:  Eshel Faraggi; Yaoqi Zhou; Andrzej Kloczkowski
Journal:  Proteins       Date:  2014-09-25

7.  Ribavirin-resistant mutants of human enterovirus 71 express a high replication fidelity phenotype during growth in cell culture.

Authors:  Sara Sadeghipour; Emily J Bek; Peter C McMinn
Journal:  J Virol       Date:  2012-11-21       Impact factor: 5.103

8.  Phosphoproteomics reveals conserved exercise-stimulated signaling and AMPK regulation of store-operated calcium entry.

Authors:  Marin E Nelson; Benjamin L Parker; James G Burchfield; Nolan J Hoffman; Elise J Needham; Kristen C Cooke; Timur Naim; Lykke Sylow; Naomi Xy Ling; Deanne Francis; Dougall M Norris; Rima Chaudhuri; Jonathan S Oakhill; Erik A Richter; Gordon S Lynch; Jacqueline Stöckli; David E James
Journal:  EMBO J       Date:  2019-08-05       Impact factor: 11.598

9.  Optimizing substitution matrix choice and gap parameters for sequence alignment.

Authors:  Robert C Edgar
Journal:  BMC Bioinformatics       Date:  2009-12-02       Impact factor: 3.169

10.  Do plants contain g protein-coupled receptors?

Authors:  Bruck Taddese; Graham J G Upton; Gregory R Bailey; Siân R D Jordan; Nuradin Y Abdulla; Philip J Reeves; Christopher A Reynolds
Journal:  Plant Physiol       Date:  2013-11-18       Impact factor: 8.340
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