Literature DB >> 18326574

ORF334 in Vibrio phage KVP40 plays the role of gp27 in T4 phage to form a heterohexameric complex.

Mai Nemoto1, Kazuhiro Mio, Shuji Kanamaru, Fumio Arisaka.   

Abstract

KVP40 is a T4-related phage, composed of 386 open reading frames (ORFs), that has a broad host range. Here, we overexpressed, purified, and biophysically characterized two of the proteins encoded in the KVP40 genome, namely, gp5 and ORF334. Homology-based comparison between KVP40 and its better-characterized sister phage, T4, was used to estimate the two KVP40 proteins' functions. KVP40 gp5 shared significant homology with T4 gp5 in the N- and C-terminal domains. Unlike T4 gp5, KVP40 gp5 lacked the internal lysozyme domain. Like T4 gp5, KVP40 gp5 was found to form a homotrimer in solution. In stark contrast, KVP40 ORF334 shared no significant homology with any known proteins from T4-related phages. KVP40 ORF334 was found to form a heterohexamer with KVP40 gp5 in solution in a fashion nearly identical to the interaction between the T4 gp5 and gp27 proteins. Electron microscope image analysis of the KVP40 gp5-ORF334 complex indicated that it had dimensions very similar to those of the T4 gp5-gp27 structure. On the basis of our biophysical characterization, along with positional genome information, we propose that ORF334 is the ortholog of T4 gp27 and that it plays the role of a linker between gp5 and the phage baseplate.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18326574      PMCID: PMC2394983          DOI: 10.1128/JB.00095-08

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  29 in total

1.  Size-distribution analysis of proteins by analytical ultracentrifugation: strategies and application to model systems.

Authors:  Peter Schuck; Matthew A Perugini; Noreen R Gonzales; Geoffrey J Howlett; Dieter Schubert
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

Review 2.  The tail lysozyme complex of bacteriophage T4.

Authors:  Fumio Arisaka; Shuji Kanamaru; Petr Leiman; Michael G Rossmann
Journal:  Int J Biochem Cell Biol       Date:  2003-01       Impact factor: 5.085

3.  The structure of the receptor-binding domain of the bacteriophage T4 short tail fibre reveals a knitted trimeric metal-binding fold.

Authors:  Ellen Thomassen; Gerrit Gielen; Michael Schütz; Guy Schoehn; Jan Pieter Abrahams; Stefan Miller; Mark J van Raaij
Journal:  J Mol Biol       Date:  2003-08-08       Impact factor: 5.469

4.  Three-dimensional structure of bacteriophage T4 baseplate.

Authors:  Victor A Kostyuchenko; Petr G Leiman; Paul R Chipman; Shuji Kanamaru; Mark J van Raaij; Fumio Arisaka; Vadim V Mesyanzhinov; Michael G Rossmann
Journal:  Nat Struct Biol       Date:  2003-08-17

5.  Structure of the cell-puncturing device of bacteriophage T4.

Authors:  Shuji Kanamaru; Petr G Leiman; Victor A Kostyuchenko; Paul R Chipman; Vadim V Mesyanzhinov; Fumio Arisaka; Michael G Rossmann
Journal:  Nature       Date:  2002-01-31       Impact factor: 49.962

Review 6.  Bacteriophage T4 genome.

Authors:  Eric S Miller; Elizabeth Kutter; Gisela Mosig; Fumio Arisaka; Takashi Kunisawa; Wolfgang Rüger
Journal:  Microbiol Mol Biol Rev       Date:  2003-03       Impact factor: 11.056

7.  A conserved genetic module that encodes the major virion components in both the coliphage T4 and the marine cyanophage S-PM2.

Authors:  E Hambly; F Tétart; C Desplats; W H Wilson; H M Krisch; N H Mann
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-11       Impact factor: 11.205

8.  Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling.

Authors:  P Schuck
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

9.  Type VI secretion system translocates a phage tail spike-like protein into target cells where it cross-links actin.

Authors:  Stefan Pukatzki; Amy T Ma; Andrew T Revel; Derek Sturtevant; John J Mekalanos
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-14       Impact factor: 11.205

10.  Complete genome sequence of the broad-host-range vibriophage KVP40: comparative genomics of a T4-related bacteriophage.

Authors:  Eric S Miller; John F Heidelberg; Jonathan A Eisen; William C Nelson; A Scott Durkin; Ann Ciecko; Tamara V Feldblyum; Owen White; Ian T Paulsen; William C Nierman; Jong Lee; Bridget Szczypinski; Claire M Fraser
Journal:  J Bacteriol       Date:  2003-09       Impact factor: 3.490

View more
  2 in total

1.  Foreword to 'Multiscale structural biology: biophysical principles and mechanisms underlying the action of bio-nanomachines', a special issue in Honour of Fumio Arisaka's 70th birthday.

Authors:  Damien Hall; Junichi Takagi; Haruki Nakamura
Journal:  Biophys Rev       Date:  2018-03-02

2.  Vibrio Phage KVP40 Encodes a Functional NAD+ Salvage Pathway.

Authors:  Jae Yun Lee; Zhiqun Li; Eric S Miller
Journal:  J Bacteriol       Date:  2017-04-11       Impact factor: 3.490

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.