Literature DB >> 18323629

A forward-looking suggestion for resolving the stereochemical restraints debate: ideal geometry functions.

P Andrew Karplus, Maxim V Shapovalov, Roland L Dunbrack, Donald S Berkholz.   

Abstract

Mesh：

Year:  2008        PMID： 18323629     DOI： 10.1107/S0907444908002333

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN： 0907-4449


× No keyword cloud information.
  11 in total

1.  Using a conformation-dependent stereochemical library improves crystallographic refinement of proteins.

Authors:  Dale E Tronrud; Donald S Berkholz; P Andrew Karplus
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-06-19

2.  Conformation dependence of backbone geometry in proteins.

Authors:  Donald S Berkholz; Maxim V Shapovalov; Roland L Dunbrack; P Andrew Karplus
Journal:  Structure       Date:  2009-10-14       Impact factor: 5.006

3.  Conformation-dependent backbone geometry restraints set a new standard for protein crystallographic refinement.

Authors:  Nigel W Moriarty; Dale E Tronrud; Paul D Adams; P Andrew Karplus
Journal:  FEBS J       Date:  2014-06-17       Impact factor: 5.542

4.  Catalytic cycle of human glutathione reductase near 1 A resolution.

Authors:  Donald S Berkholz; H Richard Faber; Savvas N Savvides; P Andrew Karplus
Journal:  J Mol Biol       Date:  2008-07-07       Impact factor: 5.469

5.  On the complexity of Engh and Huber refinement restraints: the angle τ as example.

Authors:  Wouter G Touw; Gert Vriend
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-11-16

6.  Peptide bond distortions from planarity: new insights from quantum mechanical calculations and peptide/protein crystal structures.

Authors:  Roberto Improta; Luigi Vitagliano; Luciana Esposito
Journal:  PLoS One       Date:  2011-09-16       Impact factor: 3.240

7.  Interplay between peptide bond geometrical parameters in nonglobular structural contexts.

Authors:  Luciana Esposito; Nicole Balasco; Alfonso De Simone; Rita Berisio; Luigi Vitagliano
Journal:  Biomed Res Int       Date:  2013-12-26       Impact factor: 3.411

8.  A new default restraint library for the protein backbone in Phenix: a conformation-dependent geometry goes mainstream.

Authors:  Nigel W Moriarty; Dale E Tronrud; Paul D Adams; P Andrew Karplus
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-01-01       Impact factor: 7.652

9.  Dissection of Factors Affecting the Variability of the Peptide Bond Geometry and Planarity.

Authors:  Nicole Balasco; Luciana Esposito; Amarinder Singh Thind; Mario Rosario Guarracino; Luigi Vitagliano
Journal:  Biomed Res Int       Date:  2017-10-15       Impact factor: 3.411

10.  Revisiting the planarity of nucleic acid bases: Pyramidilization at glycosidic nitrogen in purine bases is modulated by orientation of glycosidic torsion.

Authors:  Vladimir Sychrovsky; Silvie Foldynova-Trantirkova; Nada Spackova; Koen Robeyns; Luc Van Meervelt; Wulf Blankenfeldt; Zuzana Vokacova; Jiri Sponer; Lukas Trantirek
Journal:  Nucleic Acids Res       Date:  2009-11       Impact factor: 16.971
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.