Literature DB >> 18321884

e-LiSe--an online tool for finding needles in the '(Medline) haystack'.

Arek Gladki1, Pawel Siedlecki, Szymon Kaczanowski, Piotr Zielenkiewicz.   

Abstract

UNLABELLED: Using literature databases one can find not only known and true relations between processes but also less studied, non-obvious associations. The main problem with discovering such type of relevant biological information is 'selection'. The ability to distinguish between a true correlation (e.g. between different types of biological processes) and random chance that this correlation is statistically significant is crucial for any bio-medical research, literature mining being no exception. This problem is especially visible when searching for information which has not been studied and described in many publications. Therefore, a novel bio-linguistic statistical method is required, capable of 'selecting' true correlations, even when they are low-frequency associations. In this article, we present such statistical approach based on Z-score and implemented in a web-based application 'e-LiSe'. AVAILABILITY: The software is available at http://miron.ibb.waw.pl/elise/

Mesh:

Year:  2008        PMID: 18321884     DOI: 10.1093/bioinformatics/btn086

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  5 in total

1.  eGIFT: mining gene information from the literature.

Authors:  Catalina O Tudor; Carl J Schmidt; K Vijay-Shanker
Journal:  BMC Bioinformatics       Date:  2010-08-09       Impact factor: 3.169

2.  Bioinformatics and computational biology in Poland.

Authors:  Janusz M Bujnicki; Jerzy Tiuryn
Journal:  PLoS Comput Biol       Date:  2013-05-02       Impact factor: 4.475

3.  Large-scale directional relationship extraction and resolution.

Authors:  Cory B Giles; Jonathan D Wren
Journal:  BMC Bioinformatics       Date:  2008-08-12       Impact factor: 3.169

4.  GWAS for serum galactose-deficient IgA1 implicates critical genes of the O-glycosylation pathway.

Authors:  Krzysztof Kiryluk; Yifu Li; Zina Moldoveanu; Hitoshi Suzuki; Colin Reily; Ping Hou; Jingyuan Xie; Nikol Mladkova; Sindhuri Prakash; Clara Fischman; Samantha Shapiro; Robert A LeDesma; Drew Bradbury; Iuliana Ionita-Laza; Frank Eitner; Thomas Rauen; Nicolas Maillard; Francois Berthoux; Jürgen Floege; Nan Chen; Hong Zhang; Francesco Scolari; Robert J Wyatt; Bruce A Julian; Ali G Gharavi; Jan Novak
Journal:  PLoS Genet       Date:  2017-02-10       Impact factor: 5.917

5.  The High Throughput Sequence Annotation Service (HT-SAS) - the shortcut from sequence to true Medline words.

Authors:  Szymon Kaczanowski; Pawel Siedlecki; Piotr Zielenkiewicz
Journal:  BMC Bioinformatics       Date:  2009-05-16       Impact factor: 3.169

  5 in total

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