Literature DB >> 18319059

Residue 134 determines the dimer-tetramer assembly of nucleoside diphosphate kinase from moderately halophilic bacteria.

Hiroko Tokunaga1, Matsujiro Ishibashi, Fumio Arisaka, Shigeki Arai, Ryota Kuroki, Tsutomu Arakawa, Masao Tokunaga.   

Abstract

Halomonas nucleoside diphosphate kinase (HaNDK) forms a dimeric assembly and Pseudomonas NDK (PaNDK) forms a tetrameric assembly. The mutation of Glu134 to Ala in HaNDK resulted in the conversion of the native dimeric structure to the tetramer assembly. Conversely, the mutation of Ala134 to Glu in PaNDK lead to the conversion from the tetramer to the dimer assembly, indicating that a single amino acid substitution at position 134 results in an alteration of the oligomeric structure of NDK. By modeling the structure of HaNDK and PaNDK based on the crystal structure of Myxococcus NDK, we showed that Glu134 exerts sufficient repulsive forces to disrupt the dimer-dimer interaction and prevent the formation of the tetramer.

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Year:  2008        PMID: 18319059     DOI: 10.1016/j.febslet.2008.02.054

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  7 in total

1.  A structural mechanism for dimeric to tetrameric oligomer conversion in Halomonas sp. nucleoside diphosphate kinase.

Authors:  Shigeki Arai; Yasushi Yonezawa; Nobuo Okazaki; Fumiko Matsumoto; Taro Tamada; Hiroko Tokunaga; Matsujiro Ishibashi; Michael Blaber; Masao Tokunaga; Ryota Kuroki
Journal:  Protein Sci       Date:  2012-03-09       Impact factor: 6.725

2.  Foreword to 'Multiscale structural biology: biophysical principles and mechanisms underlying the action of bio-nanomachines', a special issue in Honour of Fumio Arisaka's 70th birthday.

Authors:  Damien Hall; Junichi Takagi; Haruki Nakamura
Journal:  Biophys Rev       Date:  2018-03-02

3.  Engineering of halophilic enzymes: two acidic amino acid residues at the carboxy-terminal region confer halophilic characteristics to Halomonas and Pseudomonas nucleoside diphosphate kinases.

Authors:  Hiroko Tokunaga; Tsutomu Arakawa; Masao Tokunaga
Journal:  Protein Sci       Date:  2008-06-23       Impact factor: 6.725

4.  Nucleoside Diphosphate Kinase from Psychrophilic Pseudoalteromonas sp. AS-131 Isolated from Antarctic Ocean.

Authors:  Yasushi Yonezawa; Aiko Nagayama; Hiroko Tokunaga; Matsujiro Ishibashi; Shigeki Arai; Ryota Kuroki; Keiichi Watanabe; Tsutomu Arakawa; Masao Tokunaga
Journal:  Protein J       Date:  2015-08       Impact factor: 2.371

5.  Molecular characterization of Chinese hamster cells mutants affected in adenosine kinase and showing novel genetic and biochemical characteristics.

Authors:  Xianying A Cui; Tanvi Agarwal; Bhag Singh; Radhey S Gupta
Journal:  BMC Biochem       Date:  2011-05-17       Impact factor: 4.059

Review 6.  Structure, Folding and Stability of Nucleoside Diphosphate Kinases.

Authors:  Florian Georgescauld; Yuyu Song; Alain Dautant
Journal:  Int J Mol Sci       Date:  2020-09-16       Impact factor: 5.923

7.  Intersubunit ionic interactions stabilize the nucleoside diphosphate kinase of Mycobacterium tuberculosis.

Authors:  Florian Georgescauld; Lucile Moynié; Johann Habersetzer; Laura Cervoni; Iulia Mocan; Tudor Borza; Pernile Harris; Alain Dautant; Ioan Lascu
Journal:  PLoS One       Date:  2013-03-05       Impact factor: 3.240

  7 in total

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