Literature DB >> 18315086

Thermodynamics of peptide aggregation processes: an analysis from perspectives of three statistical ensembles.

Christoph Junghans1, Michael Bachmann, Wolfhard Janke.   

Abstract

We employ a mesoscopic model for studying aggregation processes of proteinlike hydrophobic-polar heteropolymers. By means of multicanonical Monte Carlo computer simulations, we find strong indications that peptide aggregation is a phase separation process, in which the microcanonical entropy exhibits a convex intruder due to non-negligible surface effects of the small systems. We analyze thermodynamic properties of the conformational transitions accompanying the aggregation process from the multicanonical, canonical, and microcanonical perspective. It turns out that the microcanonical description is particularly advantageous as it allows for unraveling details of the phase-separation transition in the thermodynamic region, where the temperature is not a suitable external control parameter anymore.

Mesh:

Substances:

Year:  2008        PMID: 18315086     DOI: 10.1063/1.2830233

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  5 in total

1.  Structural basis of folding cooperativity in model proteins: insights from a microcanonical perspective.

Authors:  Tristan Bereau; Markus Deserno; Michael Bachmann
Journal:  Biophys J       Date:  2011-06-08       Impact factor: 4.033

2.  Interplay between secondary and tertiary structure formation in protein folding cooperativity.

Authors:  Tristan Bereau; Michael Bachmann; Markus Deserno
Journal:  J Am Chem Soc       Date:  2010-09-29       Impact factor: 15.419

3.  Sampling of Protein Folding Transitions: Multicanonical Versus Replica Exchange Molecular Dynamics.

Authors:  Ping Jiang; Fatih Yaşar; Ulrich H E Hansmann
Journal:  J Chem Theory Comput       Date:  2013-08-13       Impact factor: 6.006

4.  Examining the phase transition behavior of amphiphilic lipids in solution using statistical temperature molecular dynamics and replica-exchange Wang-Landau methods.

Authors:  Lili Gai; Thomas Vogel; Katie A Maerzke; Christopher R Iacovella; David P Landau; Peter T Cummings; Clare McCabe
Journal:  J Chem Phys       Date:  2013-08-07       Impact factor: 3.488

5.  Diagrams of States of Single Flexible-Semiflexible Multi-Block Copolymer Chains: A Flat-Histogram Monte Carlo Study.

Authors:  Daria Maltseva; Sergey Zablotskiy; Julia Martemyanova; Viktor Ivanov; Timur Shakirov; Wolfgang Paul
Journal:  Polymers (Basel)       Date:  2019-04-30       Impact factor: 4.329

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.