Literature DB >> 18314977

Spectroscopic and density functional theory studies of the blue-copper site in M121SeM and C112SeC azurin: Cu-Se versus Cu-S bonding.

Ritimukta Sarangi1, Serge I Gorelsky, Lipika Basumallick, Hee Jung Hwang, Russell C Pratt, T Daniel P Stack, Yi Lu, Keith O Hodgson, Britt Hedman, Edward I Solomon.   

Abstract

S K-edge X-ray absorption, UV-vis absorption, magnetic circular dichroism (MCD), and resonance Raman spectroscopies are used to investigate the electronic structure differences among WT, M121SeM, and C112SeC Pseudomonas aeruginosa (P.a) azurin. A comparison of S K-edge XAS of WT and M121SeM azurin and a CuII-thioether model complex shows that the 38% S character in the ground state wave function of the blue-copper (BC) sites solely reflects the Cu-SCys bond. Resonance Raman (rR) data on WT and C112SeC azurin give direct evidence for the kinematic coupling between the Cu-SCys stretch and the cysteine deformation modes in WT azurin, which leads to multiple features in the rR spectrum of the BC site. The UV-vis absorption and MCD data on WT, M121SeM, and C112SeC give very similar C0/D0 ratios, indicating that the C-term MCD intensity mechanism involves Cu-centered spin-orbit coupling (SOC). The spectroscopic data combined with density functional theory (DFT) calculations indicate that SCys and SeCys have similar covalent interactions with Cu at their respective bond lengths of 2.1 and 2.3 A. This reflects the similar electronegativites of S and Se in the thiolate/selenolate ligand fragment and explains the strong spectroscopic similarities between WT and C112SeC azurin.

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Year:  2008        PMID: 18314977      PMCID: PMC2713798          DOI: 10.1021/ja076495a

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  36 in total

1.  An engineered azurin variant containing a selenocysteine copper ligand.

Authors:  Steven M Berry; Matt D Gieselman; Mark J Nilges; Wilfred A van Der Donk; Yi Lu
Journal:  J Am Chem Soc       Date:  2002-03-13       Impact factor: 15.419

2.  Catalytic properties of an Escherichia coli formate dehydrogenase mutant in which sulfur replaces selenium.

Authors:  M J Axley; A Böck; T C Stadtman
Journal:  Proc Natl Acad Sci U S A       Date:  1991-10-01       Impact factor: 11.205

3.  Expressed protein ligation, a novel method for studying protein-protein interactions in transcription.

Authors:  K Severinov; T W Muir
Journal:  J Biol Chem       Date:  1998-06-26       Impact factor: 5.157

4.  Crystal structure of formate dehydrogenase H: catalysis involving Mo, molybdopterin, selenocysteine, and an Fe4S4 cluster.

Authors:  J C Boyington; V N Gladyshev; S V Khangulov; T C Stadtman; P D Sun
Journal:  Science       Date:  1997-02-28       Impact factor: 47.728

5.  Spectroscopic and DFT investigation of [M{HB(3,5-iPr2pz)3}(SC6F5)] (M = Mn, Fe, Co, Ni, Cu, and Zn) model complexes: periodic trends in metal-thiolate bonding.

Authors:  Serge I Gorelsky; Lipika Basumallick; Josh Vura-Weis; Ritimukta Sarangi; Keith O Hodgson; Britt Hedman; Kiyoshi Fujisawa; Edward I Solomon
Journal:  Inorg Chem       Date:  2005-07-11       Impact factor: 5.165

Review 6.  Metal-thiolate bonds in bioinorganic chemistry.

Authors:  Edward I Solomon; Serge I Gorelsky; Abhishek Dey
Journal:  J Comput Chem       Date:  2006-09       Impact factor: 3.376

7.  MCD C-Term Signs, Saturation Behavior, and Determination of Band Polarizations in Randomly Oriented Systems with Spin S >/= (1)/(2). Applications to S = (1)/(2) and S = (5)/(2).

Authors:  Frank Neese; Edward I. Solomon
Journal:  Inorg Chem       Date:  1999-04-19       Impact factor: 5.165

8.  Spectroscopic and density functional studies of the red copper site in nitrosocyanin: role of the protein in determining active site geometric and electronic structure.

Authors:  Lipika Basumallick; Ritimukta Sarangi; Serena DeBeer George; Brad Elmore; Alan B Hooper; Britt Hedman; Keith O Hodgson; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2005-03-16       Impact factor: 15.419

9.  Expressed protein ligation: a general method for protein engineering.

Authors:  T W Muir; D Sondhi; P A Cole
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-09       Impact factor: 11.205

10.  Construction and characterization of an azurin analog for the purple copper site in cytochrome c oxidase.

Authors:  M Hay; J H Richards; Y Lu
Journal:  Proc Natl Acad Sci U S A       Date:  1996-01-09       Impact factor: 11.205

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  11 in total

1.  Probing the role of the proximal heme ligand in cytochrome P450cam by recombinant incorporation of selenocysteine.

Authors:  Caroline Aldag; Igor A Gromov; Inés García-Rubio; Konstanze von Koenig; Ilme Schlichting; Bernhard Jaun; Donald Hilvert
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-17       Impact factor: 11.205

Review 2.  Metalloproteins containing cytochrome, iron-sulfur, or copper redox centers.

Authors:  Jing Liu; Saumen Chakraborty; Parisa Hosseinzadeh; Yang Yu; Shiliang Tian; Igor Petrik; Ambika Bhagi; Yi Lu
Journal:  Chem Rev       Date:  2014-04-23       Impact factor: 60.622

3.  Using solution- and solid-state S K-edge X-ray absorption spectroscopy with density functional theory to evaluate M-S bonding for MS4(2-) (M = Cr, Mo, W) dianions.

Authors:  Angela C Olson; Jason M Keith; Enrique R Batista; Kevin S Boland; Scott R Daly; Stosh A Kozimor; Molly M MacInnes; Richard L Martin; Brian L Scott
Journal:  Dalton Trans       Date:  2014-12-14       Impact factor: 4.390

4.  Design of Heteronuclear Metalloenzymes.

Authors:  A Bhagi-Damodaran; P Hosseinzadeh; E Mirts; J Reed; I D Petrik; Y Lu
Journal:  Methods Enzymol       Date:  2016-07-26       Impact factor: 1.600

Review 5.  Inner- and outer-sphere metal coordination in blue copper proteins.

Authors:  Jeffrey J Warren; Kyle M Lancaster; John H Richards; Harry B Gray
Journal:  J Inorg Biochem       Date:  2012-05-09       Impact factor: 4.155

6.  The essential role of the Cu(II) state of Sco in the maturation of the Cu(A) center of cytochrome oxidase: evidence from H135Met and H135SeM variants of the Bacillus subtilis Sco.

Authors:  Gnana S Siluvai; Michiko Nakano; Mary Mayfield; Ninian J Blackburn
Journal:  J Biol Inorg Chem       Date:  2010-10-31       Impact factor: 3.358

7.  Understanding and Modulating Metalloenzymes with Unnatural Amino Acids, Non-Native Metal Ions, and Non-Native Metallocofactors.

Authors:  Evan N Mirts; Ambika Bhagi-Damodaran; Yi Lu
Journal:  Acc Chem Res       Date:  2019-03-26       Impact factor: 22.384

8.  Crucial role of copper in detection of metal-coordinating odorants.

Authors:  Xufang Duan; Eric Block; Zhen Li; Timothy Connelly; Jian Zhang; Zhimin Huang; Xubo Su; Yi Pan; Lifang Wu; Qiuyi Chi; Siji Thomas; Shaozhong Zhang; Minghong Ma; Hiroaki Matsunami; Guo-Qiang Chen; Hanyi Zhuang
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-10       Impact factor: 11.205

9.  Spectroscopic and DFT studies of second-sphere variants of the type 1 copper site in azurin: covalent and nonlocal electrostatic contributions to reduction potentials.

Authors:  Ryan G Hadt; Ning Sun; Nicholas M Marshall; Keith O Hodgson; Britt Hedman; Yi Lu; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2012-10-02       Impact factor: 15.419

10.  Converged Structural and Spectroscopic Properties for Refined QM/MM Models of Azurin.

Authors:  Christine E Schulz; Maurice van Gastel; Dimitrios A Pantazis; Frank Neese
Journal:  Inorg Chem       Date:  2021-05-03       Impact factor: 5.165

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