Literature DB >> 18314578

Prediction of intrinsic disorder and its use in functional proteomics.

Vladimir N Uversky1, Predrag Radivojac, Lilia M Iakoucheva, Zoran Obradovic, A Keith Dunker.   

Abstract

The number of experimentally verified, intrinsically disordered (ID) proteins is rapidly rising. Research is often focused on a structural characterization of a given protein, looking for several key features. However, ID proteins with their dynamic structures that interconvert on a number of time-scales are difficult targets for the majority of traditional biophysical and biochemical techniques. Structural and functional analyses of these proteins can be significantly aided by disorder predictions. The current advances in the prediction of ID proteins and the use of protein disorder prediction in the fields of molecular biology and bioinformatics are briefly overviewed herein. A method is provided to utilize intrinsic disorder knowledge to gain structural and functional information related to individual proteins, protein groups, families, classes, and even entire proteomes.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 18314578     DOI: 10.1007/978-1-59745-547-3_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  15 in total

1.  Overlapping genes produce proteins with unusual sequence properties and offer insight into de novo protein creation.

Authors:  Corinne Rancurel; Mahvash Khosravi; A Keith Dunker; Pedro R Romero; David Karlin
Journal:  J Virol       Date:  2009-07-29       Impact factor: 5.103

2.  How disordered is my protein and what is its disorder for? A guide through the "dark side" of the protein universe.

Authors:  Philippe Lieutaud; François Ferron; Alexey V Uversky; Lukasz Kurgan; Vladimir N Uversky; Sonia Longhi
Journal:  Intrinsically Disord Proteins       Date:  2016-12-21

3.  Structural insights into activation of the retinal L-type Ca²⁺ channel (Cav1.4) by Ca²⁺-binding protein 4 (CaBP4).

Authors:  Saebomi Park; Congmin Li; Françoise Haeseleer; Krzysztof Palczewski; James B Ames
Journal:  J Biol Chem       Date:  2014-09-25       Impact factor: 5.157

4.  Independent structural domains in paramyxovirus polymerase protein.

Authors:  Melanie Dochow; Stefanie A Krumm; James E Crowe; Martin L Moore; Richard K Plemper
Journal:  J Biol Chem       Date:  2012-01-03       Impact factor: 5.157

5.  On the Need to Develop Guidelines for Characterizing and Reporting Intrinsic Disorder in Proteins.

Authors:  Michael Vincent; Vladimir N Uversky; Santiago Schnell
Journal:  Proteomics       Date:  2019-03-01       Impact factor: 3.984

6.  Predicting Protein Conformational Disorder and Disordered Binding Sites.

Authors:  Ketty C Tamburrini; Giulia Pesce; Juliet Nilsson; Frank Gondelaud; Andrey V Kajava; Jean-Guy Berrin; Sonia Longhi
Journal:  Methods Mol Biol       Date:  2022

7.  Protein intrinsic disorder and influenza virulence: the 1918 H1N1 and H5N1 viruses.

Authors:  Gerard Kian-Meng Goh; A Keith Dunker; Vladimir N Uversky
Journal:  Virol J       Date:  2009-06-03       Impact factor: 4.099

8.  At low concentrations, 3,4-dihydroxyphenylacetic acid (DOPAC) binds non-covalently to alpha-synuclein and prevents its fibrillation.

Authors:  Wenbo Zhou; Amy Gallagher; Dong-Pyo Hong; Chunmei Long; Anthony L Fink; Vladimir N Uversky
Journal:  J Mol Biol       Date:  2009-03-25       Impact factor: 5.469

9.  An FPGA implementation to detect selective cationic antibacterial peptides.

Authors:  Carlos Polanco González; Marco Aurelio Nuño Maganda; Miguel Arias-Estrada; Gabriel del Rio
Journal:  PLoS One       Date:  2011-06-28       Impact factor: 3.240

10.  Analysis and consensus of currently available intrinsic protein disorder annotation sources in the MobiDB database.

Authors:  Tomás Di Domenico; Ian Walsh; Silvio C E Tosatto
Journal:  BMC Bioinformatics       Date:  2013-04-22       Impact factor: 3.169

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.