Literature DB >> 18313147

A new method for extraction of double-stranded RNA from plants.

Ioannis E Tzanetakis1, Robert R Martin.   

Abstract

The occurrence of high molecular weight double-stranded RNA (dsRNA) in plants is associated with the presence of RNA viruses. DsRNA is stable, can be extracted easily from the majority of plant species and provides an excellent tool for characterization of novel viruses that are recalcitrant to purification. Several protocols have been developed for dsRNA purification, the majority of which are based on extraction with phenol and chloroform. We have developed a protocol for dsRNA extraction based on a lithium salts buffer that does not require organic solvents other than alcohols. The method yields comparable amount of dsRNA to protocols described previously and yields consistently dsRNA from Vaccinium hosts that have been recalcitrant to dsRNA purification using traditional protocols. The quality of the dsRNA purified is such that it can be used for downstream enzymatic reactions including reverse transcription-polymerase chain reaction and cloning.

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Year:  2008        PMID: 18313147     DOI: 10.1016/j.jviromet.2008.01.014

Source DB:  PubMed          Journal:  J Virol Methods        ISSN: 0166-0934            Impact factor:   2.014


  8 in total

1.  Molecular detection of watermelon mosaic virus associated with a serious mosaic disease on Cucurbita pepo L. in Shanxi, China.

Authors:  Yanbing Niu; Xiaojing Pang; Yuanyuan Cheng; Defu Wang; Shang Guo; Yong Liu
Journal:  Virusdisease       Date:  2017-06-29

2.  Molecular characterization of a new Tospovirus infecting soybean.

Authors:  J Zhou; S K Kantartzi; R-H Wen; M Newman; M R Hajimorad; J C Rupe; I E Tzanetakis
Journal:  Virus Genes       Date:  2011-05-22       Impact factor: 2.332

3.  Efficacy of Tissue Culture in Virus Elimination from Caprifig and Female Fig Varieties (Ficus carica L.).

Authors:  Chokri Bayoudh; Manel Elair; Rahma Labidi; Afifa Majdoub; Naima Mahfoudhi; Messaoud Mars
Journal:  Plant Pathol J       Date:  2017-06-01       Impact factor: 1.795

Review 4.  Illuminating an Ecological Blackbox: Using High Throughput Sequencing to Characterize the Plant Virome Across Scales.

Authors:  François Maclot; Thierry Candresse; Denis Filloux; Carolyn M Malmstrom; Philippe Roumagnac; René van der Vlugt; Sébastien Massart
Journal:  Front Microbiol       Date:  2020-10-16       Impact factor: 5.640

5.  Complete Genome Sequencing and Infectious cDNA Clone Construction of Soybean Mosaic Virus Isolated from Shanxi.

Authors:  Defu Wang; Liyan Cui; Li Zhang; Zhennan Ma; Yanbing Niu
Journal:  Plant Pathol J       Date:  2021-04-01       Impact factor: 1.795

6.  Blackcurrant Leaf Chlorosis Associated Virus: Evidence of the Presence of Circular RNA during Infections.

Authors:  Delano James; James Phelan; Daniel Sanderson
Journal:  Viruses       Date:  2018-05-15       Impact factor: 5.048

7.  Addressing Research Needs in the Field of Plant Virus Ecology by Defining Knowledge Gaps and Developing Wild Dicot Study Systems.

Authors:  Tessa M Shates; Penglin Sun; Carolyn M Malmstrom; Chrysalyn Dominguez; Kerry E Mauck
Journal:  Front Microbiol       Date:  2019-01-09       Impact factor: 5.640

8.  Development of Drugs Based on High-Polymeric Double-Stranded RNA for Antiviral and Antitumor Therapy.

Authors:  E D Danilenko; A O Belkina; G M Sysoeva
Journal:  Biochem Mosc Suppl B Biomed Chem       Date:  2019-12-04
  8 in total

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