Literature DB >> 18310619

Reference descriptions of cellular electrophysiology models.

David P Nickerson1, Alberto Corrias, Martin L Buist.   

Abstract

UNLABELLED: In recent years there has been much development of the fundamental ideas underlying mathematical model curation in regard to models of biology. While much has been achieved in the realms of systems biology and bioinformatics, little progress has been made in relation to cellular electrophysiology modeling. The primary reason for slow progress in this field is the lack of a consistent and machine-readable reference description for a given model. CellML has been widely used to describe mathematical models of cellular electrophysiology in an unambiguous, machine-readable format. Through the use of well-annotated CellML models we propose a standard by which reference descriptions of cellular electrophysiology models can be similarly defined in an unambiguous, software independent, and machine-readable format. Adoption of this standard will provide a consistent technology by which cellular electrophysiology models can be curated. AVAILABILITY: http://www.bioeng.nus.edu.sg/compbiolab/p2/

Mesh:

Substances:

Year:  2008        PMID: 18310619     DOI: 10.1093/bioinformatics/btn080

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  5 in total

1.  A tool for multi-scale modelling of the renal nephron.

Authors:  David P Nickerson; Jonna R Terkildsen; Kirk L Hamilton; Peter J Hunter
Journal:  Interface Focus       Date:  2011-03-30       Impact factor: 3.906

2.  Modular modelling with Physiome standards.

Authors:  Michael T Cooling; David P Nickerson; Poul M F Nielsen; Peter J Hunter
Journal:  J Physiol       Date:  2016-08-29       Impact factor: 5.182

3.  An overview of the CellML API and its implementation.

Authors:  Andrew K Miller; Justin Marsh; Adam Reeve; Alan Garny; Randall Britten; Matt Halstead; Jonathan Cooper; David P Nickerson; Poul F Nielsen
Journal:  BMC Bioinformatics       Date:  2010-04-08       Impact factor: 3.169

4.  CellML metadata standards, associated tools and repositories.

Authors:  Daniel A Beard; Randall Britten; Mike T Cooling; Alan Garny; Matt D B Halstead; Peter J Hunter; James Lawson; Catherine M Lloyd; Justin Marsh; Andrew Miller; David P Nickerson; Poul M F Nielsen; Taishin Nomura; Shankar Subramanium; Sarala M Wimalaratne; Tommy Yu
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2009-05-28       Impact factor: 4.226

5.  SBMLSimulator: A Java Tool for Model Simulation and Parameter Estimation in Systems Biology.

Authors:  Alexander Dörr; Roland Keller; Andreas Zell; Andreas Dräger
Journal:  Computation (Basel)       Date:  2014-12-18
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.