Literature DB >> 18304372

Intron mis-splicing: no alternative?

Scott William Roy1, Manuel Irimia.   

Abstract

A recent report reveals widespread mis-splicing of RNA transcripts in eukaryotes, with mis-spliced RNA destroyed by nonsense-mediated mRNA decay. This striking inefficiency deepens the mystery of the proliferation and persistence of introns.

Entities:  

Mesh：

Year:  2008        PMID： 18304372      PMCID： PMC2374719          DOI： 10.1186/gb-2008-9-2-208

Source DB:  PubMed          Journal:  Genome Biol        ISSN： 1474-7596            Impact factor:   13.583


  19 in total

Review 1.  Nonsense-mediated mRNA decay: terminating erroneous gene expression.

Authors:  Kristian E Baker; Roy Parker
Journal:  Curr Opin Cell Biol       Date:  2004-06       Impact factor: 8.382

2.  Complex spliceosomal organization ancestral to extant eukaryotes.

Authors:  Lesley Collins; David Penny
Journal:  Mol Biol Evol       Date:  2005-01-19       Impact factor: 16.240

Review 3.  Analysis of evolution of exon-intron structure of eukaryotic genes.

Authors:  Igor B Rogozin; Alexander V Sverdlov; Vladimir N Babenko; Eugene V Koonin
Journal:  Brief Bioinform       Date:  2005-06       Impact factor: 11.622

4.  High qualitative and quantitative conservation of alternative splicing in Caenorhabditis elegans and Caenorhabditis briggsae.

Authors:  Jakob Lewin Rukov; Manuel Irimia; Søren Mørk; Viktor Karlovich Lund; Jeppe Vinther; Peter Arctander
Journal:  Mol Biol Evol       Date:  2007-02-01       Impact factor: 16.240

5.  Widespread evolutionary conservation of alternatively spliced exons in Caenorhabditis.

Authors:  Manuel Irimia; Jakob L Rukov; David Penny; Jordi Garcia-Fernandez; Jeppe Vinther; Scott W Roy
Journal:  Mol Biol Evol       Date:  2007-11-28       Impact factor: 16.240

Review 6.  Coevolution of genomic intron number and splice sites.

Authors:  Manuel Irimia; David Penny; Scott W Roy
Journal:  Trends Genet       Date:  2007-04-18       Impact factor: 11.639

7.  New maximum likelihood estimators for eukaryotic intron evolution.

Authors:  Hung D Nguyen; Maki Yoshihama; Naoya Kenmochi
Journal:  PLoS Comput Biol       Date:  2005-12-30       Impact factor: 4.475

8.  A high density of ancient spliceosomal introns in oxymonad excavates.

Authors:  Claudio H Slamovits; Patrick J Keeling
Journal:  BMC Evol Biol       Date:  2006-04-25       Impact factor: 3.260

9.  Conservation versus parallel gains in intron evolution.

Authors:  Alexander V Sverdlov; Igor B Rogozin; Vladimir N Babenko; Eugene V Koonin
Journal:  Nucleic Acids Res       Date:  2005-03-23       Impact factor: 16.971

10.  Analysis of ribosomal protein gene structures: implications for intron evolution.

Authors:  Maki Yoshihama; Akihiro Nakao; Hung D Nguyen; Naoya Kenmochi
Journal:  PLoS Genet       Date:  2006-03-03       Impact factor: 5.917
View more
  20 in total

1.  Characterization of NOL7 gene point mutations, promoter methylation, and protein expression in cervical cancer.

Authors:  Colleen L Doçi; Tanmayi P Mankame; Alexander Langerman; Kelly R Ostler; Rajani Kanteti; Timothy Best; Kenan Onel; Lucy A Godley; Ravi Salgia; Mark W Lingen
Journal:  Int J Gynecol Pathol       Date:  2012-01       Impact factor: 2.762

2.  Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: a somatic view of the germline.

Authors:  Laurent Duret; Jean Cohen; Claire Jubin; Philippe Dessen; Jean-François Goût; Sylvain Mousset; Jean-Marc Aury; Olivier Jaillon; Benjamin Noël; Olivier Arnaiz; Mireille Bétermier; Patrick Wincker; Eric Meyer; Linda Sperling
Journal:  Genome Res       Date:  2008-02-06       Impact factor: 9.043

3.  Complex selection on 5' splice sites in intron-rich organisms.

Authors:  Manuel Irimia; Scott William Roy; Daniel E Neafsey; Josep F Abril; Jordi Garcia-Fernandez; Eugene V Koonin
Journal:  Genome Res       Date:  2009-09-10       Impact factor: 9.043

4.  Direct RNA sequencing.

Authors:  Fatih Ozsolak; Adam R Platt; Dan R Jones; Jeffrey G Reifenberger; Lauryn E Sass; Peter McInerney; John F Thompson; Jayson Bowers; Mirna Jarosz; Patrice M Milos
Journal:  Nature       Date:  2009-09-23       Impact factor: 49.962

5.  Origin of spliceosomal introns and alternative splicing.

Authors:  Manuel Irimia; Scott William Roy
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-06-02       Impact factor: 10.005

6.  The Y Chromosome Modulates Splicing and Sex-Biased Intron Retention Rates in Drosophila.

Authors:  Meng Wang; Alan T Branco; Bernardo Lemos
Journal:  Genetics       Date:  2017-12-20       Impact factor: 4.562

Review 7.  Deep intronic mutations and human disease.

Authors:  Rita Vaz-Drago; Noélia Custódio; Maria Carmo-Fonseca
Journal:  Hum Genet       Date:  2017-05-12       Impact factor: 4.132

8.  Transcriptome profiling using single-molecule direct RNA sequencing.

Authors:  Fatih Ozsolak; Patrice M Milos
Journal:  Methods Mol Biol       Date:  2011

9.  Integrin α3β1 controls mRNA splicing that determines Cox-2 mRNA stability in breast cancer cells.

Authors:  Sita Subbaram; Scott P Lyons; Kimberly B Svenson; Sean L Hammond; Lorena G McCabe; Sridar V Chittur; C Michael DiPersio
Journal:  J Cell Sci       Date:  2014-01-16       Impact factor: 5.285

10.  Detection and analysis of alternative splicing in Yarrowia lipolytica reveal structural constraints facilitating nonsense-mediated decay of intron-retaining transcripts.

Authors:  Meryem Mekouar; Isabelle Blanc-Lenfle; Christophe Ozanne; Corinne Da Silva; Corinne Cruaud; Patrick Wincker; Claude Gaillardin; Cécile Neuvéglise
Journal:  Genome Biol       Date:  2010-06-23       Impact factor: 13.583
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.