Literature DB >> 18298549

Genomics and the immune system.

Matthew E Pipkin1, Silvia Monticelli.   

Abstract

While the hereditary information encoded in the Watson-Crick base pairing of genomes is largely static within a given individual, access to this information is controlled by dynamic mechanisms. The human genome is pervasively transcribed, but the roles played by the majority of the non-protein-coding genome sequences are still largely unknown. In this review we focus on insights to gene transcriptional regulation by placing special emphasis on genome-wide approaches, and on how non-coding RNAs, which derive from global transcription of the genome, in turn control gene expression. We review recent progress in the field with highlights on the immune system.

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Year:  2008        PMID: 18298549      PMCID: PMC2434389          DOI: 10.1111/j.1365-2567.2008.02818.x

Source DB:  PubMed          Journal:  Immunology        ISSN: 0019-2805            Impact factor:   7.397


  78 in total

Review 1.  Interaction of viruses with the mammalian RNA interference pathway.

Authors:  Sylvia Schütz; Peter Sarnow
Journal:  Virology       Date:  2006-01-05       Impact factor: 3.616

2.  Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS).

Authors:  Gregory E Crawford; Ingeborg E Holt; James Whittle; Bryn D Webb; Denise Tai; Sean Davis; Elliott H Margulies; YiDong Chen; John A Bernat; David Ginsburg; Daixing Zhou; Shujun Luo; Thomas J Vasicek; Mark J Daly; Tyra G Wolfsberg; Francis S Collins
Journal:  Genome Res       Date:  2005-12-12       Impact factor: 9.043

Review 3.  T helper cell differentiation: regulation by cis elements and epigenetics.

Authors:  Gap Ryol Lee; Sean T Kim; Charalampos G Spilianakis; Patrick E Fields; Richard A Flavell
Journal:  Immunity       Date:  2006-04       Impact factor: 31.745

Review 4.  Is RNA interference involved in intrinsic antiviral immunity in mammals?

Authors:  Bryan R Cullen
Journal:  Nat Immunol       Date:  2006-06       Impact factor: 25.606

5.  A minicircuitry comprised of microRNA-223 and transcription factors NFI-A and C/EBPalpha regulates human granulopoiesis.

Authors:  Francesco Fazi; Alessandro Rosa; Alessandro Fatica; Vania Gelmetti; Maria Laura De Marchis; Clara Nervi; Irene Bozzoni
Journal:  Cell       Date:  2005-12-02       Impact factor: 41.582

Review 6.  Regulation of Th2 differentiation and Il4 locus accessibility.

Authors:  K Mark Ansel; Ivana Djuretic; Bogdan Tanasa; Anjana Rao
Journal:  Annu Rev Immunol       Date:  2006       Impact factor: 28.527

7.  Pre-B cell proliferation and lymphoblastic leukemia/high-grade lymphoma in E(mu)-miR155 transgenic mice.

Authors:  Stefan Costinean; Nicola Zanesi; Yuri Pekarsky; Esmerina Tili; Stefano Volinia; Nyla Heerema; Carlo M Croce
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-25       Impact factor: 11.205

Review 8.  siRNA-mediated transcriptional gene silencing: the potential mechanism and a possible role in the histone code.

Authors:  K V Morris
Journal:  Cell Mol Life Sci       Date:  2005-12       Impact factor: 9.261

9.  MicroRNA profiling of the murine hematopoietic system.

Authors:  Silvia Monticelli; K Mark Ansel; Changchun Xiao; Nicholas D Socci; Anna M Krichevsky; To-Ha Thai; Nikolaus Rajewsky; Debora S Marks; Chris Sander; Klaus Rajewsky; Anjana Rao; Kenneth S Kosik
Journal:  Genome Biol       Date:  2005-08-01       Impact factor: 13.583

10.  A reliable method to display authentic DNase I hypersensitive sites at long-ranges in single-copy genes from large genomes.

Authors:  Matthew E Pipkin; Mathias G Lichtenheld
Journal:  Nucleic Acids Res       Date:  2006-03-01       Impact factor: 16.971

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  4 in total

1.  MicroRNA expression profiles predictive of human renal allograft status.

Authors:  Dany Anglicheau; Vijay K Sharma; Ruchuang Ding; Aurélie Hummel; Catherine Snopkowski; Darshana Dadhania; Surya V Seshan; Manikkam Suthanthiran
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-16       Impact factor: 11.205

Review 2.  In vivo RNAi screens: concepts and applications.

Authors:  Shane Crotty; Matthew E Pipkin
Journal:  Trends Immunol       Date:  2015-04-27       Impact factor: 16.687

Review 3.  MicroRNAs: small RNAs with big effects.

Authors:  Dany Anglicheau; Thangamani Muthukumar; Manikkam Suthanthiran
Journal:  Transplantation       Date:  2010-07-27       Impact factor: 4.939

4.  Gene Size Matters: An Analysis of Gene Length in the Human Genome.

Authors:  Inês Lopes; Gulam Altab; Priyanka Raina; João Pedro de Magalhães
Journal:  Front Genet       Date:  2021-02-11       Impact factor: 4.599

  4 in total

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