Literature DB >> 18294970

Biological data integration using Semantic Web technologies.

C Pasquier1.   

Abstract

Current research in biology heavily depends on the availability and efficient use of information. In order to build new knowledge, various sources of biological data must often be combined. Semantic Web technologies, which provide a common framework allowing data to be shared and reused between applications, can be applied to the management of disseminated biological data. However, due to some specificities of biological data, the application of these technologies to life science constitutes a real challenge. Through a use case of biological data integration, we show in this paper that current Semantic Web technologies start to become mature and can be applied for the development of large applications. However, in order to get the best from these technologies, improvements are needed both at the level of tool performance and knowledge modeling.

Mesh:

Year:  2008        PMID: 18294970     DOI: 10.1016/j.biochi.2008.02.007

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  11 in total

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3.  GPCR ontology: development and application of a G protein-coupled receptor pharmacology knowledge framework.

Authors:  Magdalena J Przydzial; Barun Bhhatarai; Amar Koleti; Uma Vempati; Stephan C Schürer
Journal:  Bioinformatics       Date:  2013-09-29       Impact factor: 6.937

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Journal:  BMC Bioinformatics       Date:  2009-10-01       Impact factor: 3.169

5.  Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format.

Authors:  Akira R Kinjo; Hirofumi Suzuki; Reiko Yamashita; Yasuyo Ikegawa; Takahiro Kudou; Reiko Igarashi; Yumiko Kengaku; Hasumi Cho; Daron M Standley; Atsushi Nakagawa; Haruki Nakamura
Journal:  Nucleic Acids Res       Date:  2011-10-05       Impact factor: 16.971

6.  Rapid development of entity-based data models for bioinformatics with persistence object-oriented design and structured interfaces.

Authors:  Elishai Ezra Tsur
Journal:  BioData Min       Date:  2017-03-11       Impact factor: 2.522

7.  Linked Registries: Connecting Rare Diseases Patient Registries through a Semantic Web Layer.

Authors:  Pedro Sernadela; Lorena González-Castro; Claudio Carta; Eelke van der Horst; Pedro Lopes; Rajaram Kaliyaperumal; Mark Thompson; Rachel Thompson; Núria Queralt-Rosinach; Estrella Lopez; Libby Wood; Agata Robertson; Claudia Lamanna; Mette Gilling; Michael Orth; Roxana Merino-Martinez; Manuel Posada; Domenica Taruscio; Hanns Lochmüller; Peter Robinson; Marco Roos; José Luís Oliveira
Journal:  Biomed Res Int       Date:  2017-10-29       Impact factor: 3.411

8.  BioGateway: a semantic systems biology tool for the life sciences.

Authors:  Erick Antezana; Ward Blondé; Mikel Egaña; Alistair Rutherford; Robert Stevens; Bernard De Baets; Vladimir Mironov; Martin Kuiper
Journal:  BMC Bioinformatics       Date:  2009-10-01       Impact factor: 3.169

9.  OGO: an ontological approach for integrating knowledge about orthology.

Authors:  Jose Antonio Miñarro-Gimenez; Marisa Madrid; Jesualdo Tomas Fernandez-Breis
Journal:  BMC Bioinformatics       Date:  2009-10-01       Impact factor: 3.307

10.  The Zebrafish GenomeWiki: a crowdsourcing approach to connect the long tail for zebrafish gene annotation.

Authors:  Meghna Singh; Deeksha Bhartiya; Jayant Maini; Meenakshi Sharma; Angom Ramcharan Singh; Subburaj Kadarkaraisamy; Rajiv Rana; Ankit Sabharwal; Srishti Nanda; Aravindhakshan Ramachandran; Ashish Mittal; Shruti Kapoor; Paras Sehgal; Zainab Asad; Kriti Kaushik; Shamsudheen Karuthedath Vellarikkal; Divya Jagga; Muthulakshmi Muthuswami; Rajendra K Chauhan; Elvin Leonard; Ruby Priyadarshini; Mahantappa Halimani; Sunny Malhotra; Ashok Patowary; Harinder Vishwakarma; Prateek Joshi; Vivek Bhardwaj; Arijit Bhaumik; Bharat Bhatt; Aamod Jha; Aalok Kumar; Prerna Budakoti; Mukesh Kumar Lalwani; Rajeshwari Meli; Saakshi Jalali; Kandarp Joshi; Koustav Pal; Heena Dhiman; Saurabh V Laddha; Vaibhav Jadhav; Naresh Singh; Vikas Pandey; Chetana Sachidanandan; Stephen C Ekker; Eric W Klee; Vinod Scaria; Sridhar Sivasubbu
Journal:  Database (Oxford)       Date:  2014-02-26       Impact factor: 3.451

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