Literature DB >> 18293112

Evolutionary cytogenetics in salamanders.

Stanley K Sessions1.   

Abstract

Salamanders (Amphibia: Caudata/Urodela) have been the subject of numerous cytogenetic studies, and data on karyotypes and genome sizes are available for most groups. Salamanders show a more-or-less distinct dichotomy between families with large chromosome numbers and interspecific variation in chromosome number, relative size, and shape (i.e. position of the centromere), and those that exhibit very little variation in these karyological features. This dichotomy is the basis of a major model of karyotype evolution in salamanders involving a kind of 'karyotypic orthoselection'. Salamanders are also characterized by extremely large genomes (in terms of absolute mass of nuclear DNA) and extensive variation in genome size (and overall size of the chromosomes), which transcends variation in chromosome number and shape. The biological significance and evolution of chromosome number and shape within the karyotype is not yet understood, but genome size variation has been found to have strong phenotypic, biogeographic, and phylogenetic correlates that reveal information about the biological significance of this cytogenetic variable. Urodeles also present the advantage of only 10 families and less than 600 species, which facilitates the analysis of patterns within the entire order. The purpose of this review is to present a summary of what is currently known about overall patterns of variation in karyology and genome size in salamanders. These patterns are discussed within an evolutionary context.

Mesh:

Year:  2008        PMID: 18293112     DOI: 10.1007/s10577-007-1205-3

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  27 in total

1.  Conserved vertebrate chromosome segments in the large salamander genome.

Authors:  S R Voss; J J Smith; D M Gardiner; D M Parichy
Journal:  Genetics       Date:  2001-06       Impact factor: 4.562

2.  From pixels to picograms: a beginners' guide to genome quantification by Feulgen image analysis densitometry.

Authors:  David C Hardie; T Ryan Gregory; Paul D N Hebert
Journal:  J Histochem Cytochem       Date:  2002-06       Impact factor: 2.479

3.  New chromosome number for the order Caudata.

Authors:  D G HUMPHREY
Journal:  Science       Date:  1958-08-08       Impact factor: 47.728

4.  Phylogeny, evolution, and biogeography of Asiatic Salamanders (Hynobiidae).

Authors:  Peng Zhang; Yue-Qin Chen; Hui Zhou; Yi-Fei Liu; Xiu-Ling Wang; Theodore J Papenfuss; David B Wake; Liang-Hu Qu
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-28       Impact factor: 11.205

5.  Correlations of geographic distribution and temperature of embryonic development with the nuclear DNA content in the Salamandridae (Urodela, Amphibia).

Authors:  Spartak N Litvinchuk; Jury M Rosanov; Leo J Borkin
Journal:  Genome       Date:  2007-04       Impact factor: 2.166

6.  Reproduction and the origin of polyploids in hybrid salamanders of the genus Ambystoma.

Authors:  J P Bogart; L E Licht
Journal:  Can J Genet Cytol       Date:  1986-08

7.  Selfish genes, the phenotype paradigm and genome evolution.

Authors:  W F Doolittle; C Sapienza
Journal:  Nature       Date:  1980-04-17       Impact factor: 49.962

8.  Intron-genome size relationship on a large evolutionary scale.

Authors:  A E Vinogradov
Journal:  J Mol Evol       Date:  1999-09       Impact factor: 2.395

9.  Cytogenetic analysis of the Asian plethodontid salamander, Karsenia koreana: evidence for karyotypic conservation, chromosome repatterning, and genome size evolution.

Authors:  Stanley K Sessions; Matthias Stöck; David R Vieites; Ryan Quarles; Mi-Sook Min; David B Wake
Journal:  Chromosome Res       Date:  2008-04-26       Impact factor: 5.239

10.  From biomedicine to natural history research: EST resources for ambystomatid salamanders.

Authors:  Srikrishna Putta; Jeramiah J Smith; John A Walker; Mathieu Rondet; David W Weisrock; James Monaghan; Amy K Samuels; Kevin Kump; David C King; Nicholas J Maness; Bianca Habermann; Elly Tanaka; Susan V Bryant; David M Gardiner; David M Parichy; S Randal Voss
Journal:  BMC Genomics       Date:  2004-08-13       Impact factor: 3.969

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  24 in total

1.  Probing the meiotic mechanism of intergenomic exchanges by genomic in situ hybridization on lampbrush chromosomes of unisexual Ambystoma (Amphibia: Caudata).

Authors:  Ke Bi; James P Bogart
Journal:  Chromosome Res       Date:  2010-04-01       Impact factor: 5.239

2.  Low levels of LTR retrotransposon deletion by ectopic recombination in the gigantic genomes of salamanders.

Authors:  Matthew Blake Frahry; Cheng Sun; Rebecca A Chong; Rachel Lockridge Mueller
Journal:  J Mol Evol       Date:  2015-01-22       Impact factor: 2.395

3.  Small RNAs from a Big Genome: The piRNA Pathway and Transposable Elements in the Salamander Species Desmognathus fuscus.

Authors:  M J Madison-Villar; Cheng Sun; Nelson C Lau; Matthew L Settles; Rachel Lockridge Mueller
Journal:  J Mol Evol       Date:  2016-10-14       Impact factor: 2.395

4.  Chromomeres revisited.

Authors:  Herbert C Macgregor
Journal:  Chromosome Res       Date:  2012-12       Impact factor: 5.239

5.  Origin of amphibian and avian chromosomes by fission, fusion, and retention of ancestral chromosomes.

Authors:  Stephen R Voss; D Kevin Kump; Srikrishna Putta; Nathan Pauly; Anna Reynolds; Rema J Henry; Saritha Basa; John A Walker; Jeramiah J Smith
Journal:  Genome Res       Date:  2011-04-11       Impact factor: 9.043

6.  Transposable Element Diversity Remains High in Gigantic Genomes.

Authors:  Ava Louise Haley; Rachel Lockridge Mueller
Journal:  J Mol Evol       Date:  2022-06-25       Impact factor: 3.973

7.  Cytogenetic analysis of the Asian plethodontid salamander, Karsenia koreana: evidence for karyotypic conservation, chromosome repatterning, and genome size evolution.

Authors:  Stanley K Sessions; Matthias Stöck; David R Vieites; Ryan Quarles; Mi-Sook Min; David B Wake
Journal:  Chromosome Res       Date:  2008-04-26       Impact factor: 5.239

8.  A linkage map for the Newt Notophthalmus viridescens: Insights in vertebrate genome and chromosome evolution.

Authors:  Melissa C Keinath; S Randal Voss; Panagiotis A Tsonis; Jeramiah J Smith
Journal:  Dev Biol       Date:  2016-06-02       Impact factor: 3.582

9.  Inference of the protokaryotypes of amniotes and tetrapods and the evolutionary processes of microchromosomes from comparative gene mapping.

Authors:  Yoshinobu Uno; Chizuko Nishida; Hiroshi Tarui; Satoshi Ishishita; Chiyo Takagi; Osamu Nishimura; Junko Ishijima; Hidetoshi Ota; Ayumi Kosaka; Kazumi Matsubara; Yasunori Murakami; Shigeru Kuratani; Naoto Ueno; Kiyokazu Agata; Yoichi Matsuda
Journal:  PLoS One       Date:  2012-12-31       Impact factor: 3.240

10.  Slow DNA loss in the gigantic genomes of salamanders.

Authors:  Cheng Sun; José R López Arriaza; Rachel Lockridge Mueller
Journal:  Genome Biol Evol       Date:  2012       Impact factor: 3.416

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