Literature DB >> 18292113

GOTreePlus: an interactive gene ontology browser.

Bongshin Lee1, Kristy Brown, Yetrib Hathout, Jinwook Seo.   

Abstract

UNLABELLED: We developed an interactive gene ontology (GO) browser named GOTreePlus that superimposes annotation information over GO structures. It can facilitate the identification of important GO terms through interactive visualization of them in the GO structure. The interactive pie chart summarizing an annotation distribution for a selected GO term provides users with a succinct context-sensitive overview of their experimental results. We tested our GOTreePlus using a proteome profiling dataset obtained on differentiation of retinal pigment epithelial cells where 399 proteins were quantified. AVAILABILITY: http://bioinformatics.cnmcresearch.org/GOTreePlus/.

Mesh:

Year:  2008        PMID: 18292113     DOI: 10.1093/bioinformatics/btn068

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  4 in total

1.  Juniper: A Tree+ Table Approach to Multivariate Graph Visualization.

Authors:  Carolina Nobre; Marc Streit; Alexander Lex
Journal:  IEEE Trans Vis Comput Graph       Date:  2018-09-03       Impact factor: 4.579

2.  TGF-β drives epithelial-mesenchymal transition through δEF1-mediated downregulation of ESRP.

Authors:  K Horiguchi; K Sakamoto; D Koinuma; K Semba; A Inoue; S Inoue; H Fujii; A Yamaguchi; K Miyazawa; K Miyazono; M Saitoh
Journal:  Oncogene       Date:  2011-10-31       Impact factor: 9.867

3.  SimCT: a generic tool to visualize ontology-based relationships for biological objects.

Authors:  Carl Herrmann; Sèverine Bérard; Laurent Tichit
Journal:  Bioinformatics       Date:  2009-09-23       Impact factor: 6.937

4.  Analysis and annotation of the hexaploid oat seed transcriptome.

Authors:  Juan J Gutierrez-Gonzalez; Zheng Jin Tu; David F Garvin
Journal:  BMC Genomics       Date:  2013-07-11       Impact factor: 3.969

  4 in total

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