Literature DB >> 18287693

The TAIR database.

Rebecca L Poole1.   

Abstract

The Arabidopsis Information Resource (TAIR) is a highly sophisticated, extensive, user friendly, Web-based resource for researchers working on the model plant Arabidopsis thaliana. The main gateway to this resource is through TAIR's homepage http://www.arabidopsis.org. It is a repository of large amounts of data including gene, mapping, protein, expression and community data in the form of a relational database. These data can be searched, downloaded and analysed using the tools provided. Here, the simple search (for retrieval of information), Seq Viewer (for the visualization of the five Arabidopsis chromosomes and associated annotations) and AraCyc (database of Arabidopsis biochemical pathways, with a graphical overview onto which large data sets, such as gene expression data, can be overlaid) tools are described with examples.

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Year:  2007        PMID: 18287693     DOI: 10.1007/978-1-59745-535-0_8

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  66 in total

1.  Musite, a tool for global prediction of general and kinase-specific phosphorylation sites.

Authors:  Jianjiong Gao; Jay J Thelen; A Keith Dunker; Dong Xu
Journal:  Mol Cell Proteomics       Date:  2010-08-11       Impact factor: 5.911

2.  Genome-wide analysis of helicase gene family from rice and Arabidopsis: a comparison with yeast and human.

Authors:  Pavan Umate; Renu Tuteja; Narendra Tuteja
Journal:  Plant Mol Biol       Date:  2010-04-10       Impact factor: 4.076

3.  Mapping plant interactomes using literature curated and predicted protein-protein interaction data sets.

Authors:  KiYoung Lee; David Thorneycroft; Premanand Achuthan; Henning Hermjakob; Trey Ideker
Journal:  Plant Cell       Date:  2010-04-06       Impact factor: 11.277

4.  Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans.

Authors:  Ryan J Taft; Cas Simons; Satu Nahkuri; Harald Oey; Darren J Korbie; Timothy R Mercer; Jeff Holst; William Ritchie; Justin J-L Wong; John E J Rasko; Daniel S Rokhsar; Bernard M Degnan; John S Mattick
Journal:  Nat Struct Mol Biol       Date:  2010-07-11       Impact factor: 15.369

5.  Small RNAs derived from snoRNAs.

Authors:  Ryan J Taft; Evgeny A Glazov; Timo Lassmann; Yoshihide Hayashizaki; Piero Carninci; John S Mattick
Journal:  RNA       Date:  2009-05-27       Impact factor: 4.942

6.  Patterns of tandem repetition in plant whole genome assemblies.

Authors:  Rafael Navajas-Pérez; Andrew H Paterson
Journal:  Mol Genet Genomics       Date:  2009-02-26       Impact factor: 3.291

7.  Genome-wide analysis of glutathione reductase (GR) genes from rice and Arabidopsis.

Authors:  Dipesh Kumar Trivedi; Sarvajeet Singh Gill; Sandep Yadav; Narendra Tuteja
Journal:  Plant Signal Behav       Date:  2012-12-06

8.  Extensive structural renovation of retrogenes in the evolution of the Populus genome.

Authors:  Zhenglin Zhu; Yong Zhang; Manyuan Long
Journal:  Plant Physiol       Date:  2009-09-29       Impact factor: 8.340

9.  How to get the most out of your curation effort.

Authors:  Andrey Rzhetsky; Hagit Shatkay; W John Wilbur
Journal:  PLoS Comput Biol       Date:  2009-05-22       Impact factor: 4.475

10.  A composite transcriptional signature differentiates responses towards closely related herbicides in Arabidopsis thaliana and Brassica napus.

Authors:  Malay Das; Jay R Reichman; Georg Haberer; Gerhard Welzl; Felipe F Aceituno; Michael T Mader; Lidia S Watrud; Thomas G Pfleeger; Rodrigo A Gutiérrez; Anton R Schäffner; David M Olszyk
Journal:  Plant Mol Biol       Date:  2009-12-31       Impact factor: 4.076

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