Literature DB >> 18287691

MIPS plant genome information resources.

Manuel Spannagl1, Georg Haberer, Rebecca Ernst, Heiko Schoof, Klaus F X Mayer.   

Abstract

The Munich Institute for Protein Sequences (MIPS) has been involved in maintaining plant genome databases since the Arabidopsis thaliana genome project. Genome databases and analysis resources have focused on individual genomes and aim to provide flexible and maintainable data sets for model plant genomes as a backbone against which experimental data, for example from high-throughput functional genomics, can be organized and evaluated. In addition, model genomes also form a scaffold for comparative genomics, and much can be learned from genome-wide evolutionary studies.

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Year:  2007        PMID: 18287691     DOI: 10.1007/978-1-59745-535-0_6

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  5 in total

1.  Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes.

Authors:  Mateusz Janicki; Rebecca Rooke; Guojun Yang
Journal:  Chromosome Res       Date:  2011-08       Impact factor: 4.620

2.  RJPrimers: unique transposable element insertion junction discovery and PCR primer design for marker development.

Authors:  Frank M You; Humphrey Wanjugi; Naxin Huo; Gerard R Lazo; Ming-Cheng Luo; Olin D Anderson; Jan Dvorak; Yong Q Gu
Journal:  Nucleic Acids Res       Date:  2010-05-23       Impact factor: 16.971

3.  EuGène-maize: a web site for maize gene prediction.

Authors:  Pierre Montalent; Johann Joets
Journal:  Bioinformatics       Date:  2010-04-16       Impact factor: 6.937

4.  Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence.

Authors:  Frank M You; Naxin Huo; Karin R Deal; Yong Q Gu; Ming-Cheng Luo; Patrick E McGuire; Jan Dvorak; Olin D Anderson
Journal:  BMC Genomics       Date:  2011-01-25       Impact factor: 3.969

5.  OryGenesDB 2008 update: database interoperability for functional genomics of rice.

Authors:  Gaëtan Droc; Christophe Périn; Sébastien Fromentin; Pierre Larmande
Journal:  Nucleic Acids Res       Date:  2008-11-26       Impact factor: 16.971

  5 in total

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