Literature DB >> 18287690

Plant database resources at The Institute for Genomic Research.

Agnes P Chan1, Pablo D Rabinowicz, John Quackenbush, C Robin Buell, Chris D Town.   

Abstract

With the completion of the genome sequences of the model plants Arabidopsis and rice, and the continuing sequencing efforts of other economically important crop plants, an unprecedented amount of genome sequence data is now available for large-scale genomics studies and analyses, such as the identification and discovery of novel genes, comparative genomics, and functional genomics. Efficient utilization of these large data sets is critically dependent on the ease of access and organization of the data. The plant databases at The Institute for Genomic Research (TIGR) have been set up to maintain various data types including genomic sequence, annotation and analyses, expressed transcript assemblies and analyses, and gene expression profiles from microarray studies. We present here an overview of the TIGR database resources for plant genomics and describe methods to access the data.

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Year:  2007        PMID: 18287690     DOI: 10.1007/978-1-59745-535-0_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  2 in total

1.  Exploration of plant genomes in the FLAGdb++ environment.

Authors:  Sandra Dèrozier; Franck Samson; Jean-Philippe Tamby; Cécile Guichard; Véronique Brunaud; Philippe Grevet; Séverine Gagnot; Philippe Label; Jean-Charles Leplé; Alain Lecharny; Sébastien Aubourg
Journal:  Plant Methods       Date:  2011-03-29       Impact factor: 4.993

2.  starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data.

Authors:  Jian-Hua Yang; Jun-Hao Li; Peng Shao; Hui Zhou; Yue-Qin Chen; Liang-Hu Qu
Journal:  Nucleic Acids Res       Date:  2010-10-30       Impact factor: 16.971

  2 in total

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