Literature DB >> 18287686

The EMBL Nucleotide Sequence and Genome Reviews Databases.

Peter Sterk1, Tamara Kulikova, Paul Kersey, Rolf Apweiler.   

Abstract

Nucleotide and protein sequence databases are major resources for biological and medical research. This chapter introduces the European Molecular Biology Laboratory (EMBL) Nucleotide Sequence Database, a comprehensive primary data archive for nucleic acid sequences, and Genome Reviews, a secondary database that provides an up-to-date, standardized and comprehensively annotated view of the genomic sequence of selected organisms with completely deciphered genomes. Focusing on plant nucleotide sequences, we demonstrate how these data are accessed, how sequence similarity searches are performed and how we can obtain a wealth of additional information relating to genome sequences using Integr8.

Mesh:

Year:  2007        PMID: 18287686     DOI: 10.1007/978-1-59745-535-0_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  9 in total

1.  Disease and phenotype data at Ensembl.

Authors:  Giulietta M Spudich; Xosé M Fernández-Suárez
Journal:  Curr Protoc Hum Genet       Date:  2011-04

2.  PhEVER: a database for the global exploration of virus-host evolutionary relationships.

Authors:  Leonor Palmeira; Simon Penel; Vincent Lotteau; Chantal Rabourdin-Combe; Christian Gautier
Journal:  Nucleic Acids Res       Date:  2010-11-16       Impact factor: 16.971

3.  firestar--advances in the prediction of functionally important residues.

Authors:  Gonzalo Lopez; Paolo Maietta; Jose Manuel Rodriguez; Alfonso Valencia; Michael L Tress
Journal:  Nucleic Acids Res       Date:  2011-06-14       Impact factor: 16.971

4.  BacMap: an up-to-date electronic atlas of annotated bacterial genomes.

Authors:  Joseph Cruz; Yifeng Liu; Yongjie Liang; You Zhou; Michael Wilson; Jonathan J Dennis; Paul Stothard; Gary Van Domselaar; David S Wishart
Journal:  Nucleic Acids Res       Date:  2011-12-01       Impact factor: 16.971

5.  BIOFFORC: tool development for biological file format conversion.

Authors:  Chinnaiah Swaminathan Vinobha; Maruthamuthu Rajadurai; Ekambaram Rajasekaran
Journal:  Bioinformation       Date:  2008-10-25

6.  Distribution and phylogeny of Wolbachia strains in wild mosquito populations in Sri Lanka.

Authors:  N W Nalaka P Nugapola; W A Priyanka P De Silva; S H P Parakrama Karunaratne
Journal:  Parasit Vectors       Date:  2017-05-10       Impact factor: 3.876

7.  Databases of homologous gene families for comparative genomics.

Authors:  Simon Penel; Anne-Muriel Arigon; Jean-François Dufayard; Anne-Sophie Sertier; Vincent Daubin; Laurent Duret; Manolo Gouy; Guy Perrière
Journal:  BMC Bioinformatics       Date:  2009-06-16       Impact factor: 3.169

8.  Genome-wide identification and evolutionary analysis of the animal specific ETS transcription factor family.

Authors:  Zhipeng Wang; Qin Zhang
Journal:  Evol Bioinform Online       Date:  2009-10-02       Impact factor: 1.625

9.  FireDB: a compendium of biological and pharmacologically relevant ligands.

Authors:  Paolo Maietta; Gonzalo Lopez; Angel Carro; Benjamin J Pingilley; Leticia G Leon; Alfonso Valencia; Michael L Tress
Journal:  Nucleic Acids Res       Date:  2013-11-15       Impact factor: 16.971

  9 in total

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