Literature DB >> 18283552

Prediction of mutations in H1 neuraminidases from North America influenza A virus engineered by internal randomness.

Guang Wu1, Shaomin Yan.   

Abstract

Recently, we defined the randomness within a protein as an important force engineering mutations. Thereafter we build a cause-mutation relationship, where one side is the quantified randomness and the other side is the occurrence or non-occurrence of mutation. This way, we switch the prediction of mutation into the problem of classification, which can be solved using either logistic regression or neural network. Very recently, we attempted to apply the logistic regression to predicting the mutation positions in proteins from influenza A virus. In this study, we attempt to explore the possibility of applying the neural network to predicting the mutation positions in H1 neuraminidase from influenza A virus. Then we applied the amino-acid mutating probability to predicting the would-be-mutated amino acids at predicted positions. The results confirm the possibility of prediction of mutation using this approach and pave the way for future development.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18283552     DOI: 10.1007/s11030-008-9067-y

Source DB:  PubMed          Journal:  Mol Divers        ISSN: 1381-1991            Impact factor:   2.943


  12 in total

1.  Target-induced formation of neuraminidase inhibitors from in vitro virtual combinatorial libraries.

Authors:  Matthias Hochgürtel; Heiko Kroth; Dorothea Piecha; Michael W Hofmann; Claude Nicolau; Sonja Krause; Otmar Schaaf; Gabriele Sonnenmoser; Alexey V Eliseev
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-12       Impact factor: 11.205

Review 2.  Fate of influenza A virus proteins.

Authors:  Guang Wu; Shaomin Yan
Journal:  Protein Pept Lett       Date:  2006       Impact factor: 1.890

3.  Outliers in clinical chemistry quality-control schemes.

Authors:  M J Healy
Journal:  Clin Chem       Date:  1979-05       Impact factor: 8.327

4.  Timing of mutation in hemagglutinins from influenza A virus by means of unpredictable portion of amino-acid pair and fast Fourier transform.

Authors:  Guang Wu; Shaomin Yan
Journal:  Biochem Biophys Res Commun       Date:  2005-07-22       Impact factor: 3.575

5.  Improvement of model for prediction of hemagglutinin mutations in H5N1 influenza viruses with distinguishing of arginine, leucine and serine.

Authors:  Guang Wu; Shaomin Yan
Journal:  Protein Pept Lett       Date:  2007       Impact factor: 1.890

6.  Prediction of mutations in H5N1 hemagglutinins from influenza A virus.

Authors:  Guang Wu; Shaomin Yan
Journal:  Protein Pept Lett       Date:  2006       Impact factor: 1.890

Review 7.  Controlling influenza by inhibiting the virus's neuraminidase.

Authors:  Elspeth Garman; Graeme Laver
Journal:  Curr Drug Targets       Date:  2004-02       Impact factor: 3.465

8.  Timing of mutation in influenza A virus hemagglutinins by means of amino-acid distribution rank and fast Fourier transform.

Authors:  Guang Wu; Shaomin Yan
Journal:  Protein Pept Lett       Date:  2006       Impact factor: 1.890

9.  Determination of mutation trend in proteins by means of translation probability between RNA codes and mutated amino acids.

Authors:  Guang Wu; Shaomin Yan
Journal:  Biochem Biophys Res Commun       Date:  2005-09-26       Impact factor: 3.575

Review 10.  Mutation trend of hemagglutinin of influenza A virus: a review from a computational mutation viewpoint.

Authors:  Guang Wu; Shao-Min Yan
Journal:  Acta Pharmacol Sin       Date:  2006-05       Impact factor: 6.150

View more
  4 in total

1.  Connecting mutant phenylalanine hydroxylase with phenylketonuria.

Authors:  Shaomin Yan; Guang Wu
Journal:  J Clin Monit Comput       Date:  2008-09-05       Impact factor: 2.502

2.  Design and one-pot synthesis of 2-thiazolylhydrazone derivatives as influenza neuraminidase inhibitors.

Authors:  Keyang Yuan; Mengwu Xiao; Ying Tan; Jiao Ye; Yongle Xie; Xiaoxiao Sun; Aixi Hu; Wenwen Lian; Ailin Liu
Journal:  Mol Divers       Date:  2017-05-23       Impact factor: 2.943

3.  Quantitative relationship between mutated amino-acid sequence of human copper-transporting ATPases and their related diseases.

Authors:  Shaomin Yan; Guang Wu
Journal:  Mol Divers       Date:  2008-08-08       Impact factor: 2.943

4.  Mutation patterns in human alpha-galactosidase A.

Authors:  Shaomin Yan; Guang Wu
Journal:  Mol Divers       Date:  2009-05-26       Impact factor: 2.943

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.