Literature DB >> 18282662

Towards automated diffraction tomography. Part II--Cell parameter determination.

U Kolb1, T Gorelik, M T Otten.   

Abstract

Automated diffraction tomography (ADT) allows the collection of three-dimensional (3d) diffraction data sets from crystals down to a size of only few nanometres. Imaging is done in STEM mode, and diffraction data are collected with quasi-parallel beam nanoelectron diffraction (NED). Here, we present a set of developed processing steps necessary for automatic unit-cell parameter determination from the collected 3d diffraction data. Cell parameter determination is done via extraction of peak positions from a recorded data set (called the data reduction path) followed by subsequent cluster analysis of difference vectors. The procedure of lattice parameter determination is presented in detail for a beam-sensitive organic material. Independently, we demonstrate a potential (called the full integration path) based on 3d reconstruction of the reciprocal space visualising special structural features of materials such as partial disorder. Furthermore, we describe new features implemented into the acquisition part.

Year:  2008        PMID: 18282662     DOI: 10.1016/j.ultramic.2007.12.002

Source DB:  PubMed          Journal:  Ultramicroscopy        ISSN: 0304-3991            Impact factor:   2.689


  23 in total

Review 1.  Single-crystal structure determination of nanosized metal-organic frameworks by three-dimensional electron diffraction.

Authors:  Taimin Yang; Tom Willhammar; Hongyi Xu; Xiaodong Zou; Zhehao Huang
Journal:  Nat Protoc       Date:  2022-07-27       Impact factor: 17.021

Review 2.  Electron Diffraction of 3D Molecular Crystals.

Authors:  Ambarneil Saha; Shervin S Nia; José A Rodríguez
Journal:  Chem Rev       Date:  2022-08-15       Impact factor: 72.087

3.  Unit-cell determination from randomly oriented electron-diffraction patterns.

Authors:  Linhua Jiang; Dilyana Georgieva; Henny W Zandbergen; Jan Pieter Abrahams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-06-20

4.  Scanning precession electron tomography for three-dimensional nanoscale orientation imaging and crystallographic analysis.

Authors:  Alexander S Eggeman; Robert Krakow; Paul A Midgley
Journal:  Nat Commun       Date:  2015-06-01       Impact factor: 14.919

Review 5.  Application of synchrotron through-the-substrate microdiffraction to crystals in polished thin sections.

Authors:  Jordi Rius; Oriol Vallcorba; Carlos Frontera; Inmaculada Peral; Anna Crespi; Carles Miravitlles
Journal:  IUCrJ       Date:  2015-06-11       Impact factor: 4.769

6.  A suite of software for processing MicroED data of extremely small protein crystals.

Authors:  Matthew G Iadanza; Tamir Gonen
Journal:  J Appl Crystallogr       Date:  2014-05-29       Impact factor: 3.304

Review 7.  Application of Patterson-function direct methods to materials characterization.

Authors:  Jordi Rius
Journal:  IUCrJ       Date:  2014-08-29       Impact factor: 4.769

Review 8.  Three-dimensional electron diffraction as a complementary technique to powder X-ray diffraction for phase identification and structure solution of powders.

Authors:  Yifeng Yun; Xiaodong Zou; Sven Hovmöller; Wei Wan
Journal:  IUCrJ       Date:  2015-02-10       Impact factor: 4.769

9.  Ab initio structure determination of nanocrystals of organic pharmaceutical compounds by electron diffraction at room temperature using a Timepix quantum area direct electron detector.

Authors:  E van Genderen; M T B Clabbers; P P Das; A Stewart; I Nederlof; K C Barentsen; Q Portillo; N S Pannu; S Nicolopoulos; T Gruene; J P Abrahams
Journal:  Acta Crystallogr A Found Adv       Date:  2016-02-05       Impact factor: 2.290

10.  Three-dimensional rotation electron diffraction: software RED for automated data collection and data processing.

Authors:  Wei Wan; Junliang Sun; Jie Su; Sven Hovmöller; Xiaodong Zou
Journal:  J Appl Crystallogr       Date:  2013-11-15       Impact factor: 3.304

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