Literature DB >> 18282477

Towards a molecular characterisation of pathological pathways.

Roland A Pache1, Andreas Zanzoni, Jordi Naval, José Manuel Mas, Patrick Aloy.   

Abstract

The dominant conceptual reductionism in drug discovery has resulted in many promising drug candidates to fail during the last clinical phases, mainly due to a lack of knowledge about the patho-physiological pathways they are acting on. Consequently, to increase the revenues of the drug discovery process, we need to improve our understanding of the molecular mechanisms underlying complex cellular processes and consider each potential drug target in its full biological context. Here, we review several strategies that combine computational and experimental techniques, and suggest a systems pathology approach that will ultimately lead to a better comprehension of the molecular bases of disease.

Mesh:

Year:  2008        PMID: 18282477     DOI: 10.1016/j.febslet.2008.02.014

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  12 in total

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2.  Muscle molecular adaptations to endurance exercise training are conditioned by glycogen availability: a proteomics-based analysis in the McArdle mouse model.

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Journal:  J Physiol       Date:  2018-02-14       Impact factor: 5.182

Review 3.  Proof of concept: network and systems biology approaches aid in the discovery of potent anticancer drug combinations.

Authors:  Asfar S Azmi; Zhiwei Wang; Philip A Philip; Ramzi M Mohammad; Fazlul H Sarkar
Journal:  Mol Cancer Ther       Date:  2010-11-01       Impact factor: 6.261

4.  Systematic identification of genetic systems associated with phenotypes in patients with rare genomic copy number variations.

Authors:  F M Jabato; Pedro Seoane; James R Perkins; Elena Rojano; Adrián García Moreno; M Chagoyen; Florencio Pazos; Juan A G Ranea
Journal:  Hum Genet       Date:  2020-08-10       Impact factor: 4.132

5.  DockAnalyse: an application for the analysis of protein-protein interactions.

Authors:  Isaac Amela; Pedro Delicado; Antonio Gómez; Sílvia Bonàs; Enrique Querol; Juan Cedano
Journal:  BMC Struct Biol       Date:  2010-10-22

6.  Revealing the molecular relationship between type 2 diabetes and the metabolic changes induced by a very-low-carbohydrate low-fat ketogenic diet.

Authors:  Judith Farrés; Albert Pujol; Mireia Coma; Jose Luis Ruiz; Jordi Naval; José Manuel Mas; Agustí Molins; Joan Fondevila; Patrick Aloy
Journal:  Nutr Metab (Lond)       Date:  2010-12-09       Impact factor: 4.169

7.  Network neighbors of drug targets contribute to drug side-effect similarity.

Authors:  Lucas Brouwers; Murat Iskar; Georg Zeller; Vera van Noort; Peer Bork
Journal:  PLoS One       Date:  2011-07-13       Impact factor: 3.240

8.  Interspecies translation of disease networks increases robustness and predictive accuracy.

Authors:  Seyed Yahya Anvar; Allan Tucker; Veronica Vinciotti; Andrea Venema; Gert-Jan B van Ommen; Silvere M van der Maarel; Vered Raz; Peter A C 't Hoen
Journal:  PLoS Comput Biol       Date:  2011-11-03       Impact factor: 4.475

9.  A novel framework for the comparative analysis of biological networks.

Authors:  Roland A Pache; Patrick Aloy
Journal:  PLoS One       Date:  2012-02-21       Impact factor: 3.240

10.  Platelet aggregation pathway network-based approach for evaluating compounds efficacy.

Authors:  Jiangyong Gu; Qian Li; Lirong Chen; Youyong Li; Tingjun Hou; Gu Yuan; Xiaojie Xu
Journal:  Evid Based Complement Alternat Med       Date:  2013-04-04       Impact factor: 2.629

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