Literature DB >> 18280796

Exploring hedge identification in biomedical literature.

Ben Medlock1.   

Abstract

We investigate automatic identification of speculative language, or 'hedging', in scientific literature from the biomedical domain. Our contributions include a precise description of the task including annotation guidelines, theoretical analysis and discussion. We show that good agreement can be achieved using our guidelines and present a publicly available benchmark dataset for the task. We argue for separation of the acquisition and classification phases in semi-supervised machine learning, and present a probabilistic acquisition model which is evaluated both theoretically and experimentally. We explore the impact of different sample representations on classification accuracy across the learning curve and demonstrate the effectiveness of using machine learning for the hedge identification task. Finally, we examine the errors made by our approach and point toward avenues for future research.

Mesh:

Year:  2008        PMID: 18280796     DOI: 10.1016/j.jbi.2008.01.001

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  6 in total

1.  Identifying data sharing in biomedical literature.

Authors:  Heather A Piwowar; Wendy W Chapman; Wendy Chapman
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

2.  Detecting hedge cues and their scope in biomedical text with conditional random fields.

Authors:  Shashank Agarwal; Hong Yu
Journal:  J Biomed Inform       Date:  2010-08-13       Impact factor: 6.317

3.  ConText: an algorithm for determining negation, experiencer, and temporal status from clinical reports.

Authors:  Henk Harkema; John N Dowling; Tyler Thornblade; Wendy W Chapman
Journal:  J Biomed Inform       Date:  2009-05-10       Impact factor: 6.317

4.  Detecting modification of biomedical events using a deep parsing approach.

Authors:  Andrew Mackinlay; David Martinez; Timothy Baldwin
Journal:  BMC Med Inform Decis Mak       Date:  2012-04-30       Impact factor: 2.796

5.  Using uncertainty to link and rank evidence from biomedical literature for model curation.

Authors:  Chrysoula Zerva; Riza Batista-Navarro; Philip Day; Sophia Ananiadou
Journal:  Bioinformatics       Date:  2017-12-01       Impact factor: 6.937

6.  'HypothesisFinder:' a strategy for the detection of speculative statements in scientific text.

Authors:  Ashutosh Malhotra; Erfan Younesi; Harsha Gurulingappa; Martin Hofmann-Apitius
Journal:  PLoS Comput Biol       Date:  2013-07-25       Impact factor: 4.475

  6 in total

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