Literature DB >> 18276129

Protein targeting to ATP-dependent proteases.

Tomonao Inobe1, Andreas Matouschek.   

Abstract

ATP-dependent proteases control diverse cellular processes by degrading specific regulatory proteins. Recent work has shown that protein substrates are specifically transferred to ATP-dependent proteases through different routes. These routes can function in parallel or independently. In all of these targeting mechanisms, it can be useful to separate two steps: substrate binding to the protease and initiation of degradation.

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Year:  2008        PMID: 18276129      PMCID: PMC2346608          DOI: 10.1016/j.sbi.2007.12.014

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  87 in total

1.  Crystal structures of the HslVU peptidase-ATPase complex reveal an ATP-dependent proteolysis mechanism.

Authors:  J Wang; J J Song; M C Franklin; S Kamtekar; Y J Im; S H Rho; I S Seong; C S Lee; C H Chung; S H Eom
Journal:  Structure       Date:  2001-02-07       Impact factor: 5.006

2.  ATP-dependent proteases degrade their substrates by processively unraveling them from the degradation signal.

Authors:  C Lee; M P Schwartz; S Prakash; M Iwakura; A Matouschek
Journal:  Mol Cell       Date:  2001-03       Impact factor: 17.970

3.  Selective degradation of ubiquitinated Sic1 by purified 26S proteasome yields active S phase cyclin-Cdk.

Authors:  R Verma; H McDonald; J R Yates; R J Deshaies
Journal:  Mol Cell       Date:  2001-08       Impact factor: 17.970

Review 4.  Rad23 and Rpn10: perennial wallflowers join the melee.

Authors:  Kiran Madura
Journal:  Trends Biochem Sci       Date:  2004-12       Impact factor: 13.807

5.  The UBA2 domain functions as an intrinsic stabilization signal that protects Rad23 from proteasomal degradation.

Authors:  Stijn Heessen; Maria G Masucci; Nico P Dantuma
Journal:  Mol Cell       Date:  2005-04-15       Impact factor: 17.970

6.  Loops in the central channel of ClpA chaperone mediate protein binding, unfolding, and translocation.

Authors:  Jörg Hinnerwisch; Wayne A Fenton; Krystyna J Furtak; George W Farr; Arthur L Horwich
Journal:  Cell       Date:  2005-07-01       Impact factor: 41.582

Review 7.  Delivery of ubiquitinated substrates to protein-unfolding machines.

Authors:  Suzanne Elsasser; Daniel Finley
Journal:  Nat Cell Biol       Date:  2005-08       Impact factor: 28.824

Review 8.  Ubiquitin-binding domains.

Authors:  Linda Hicke; Heidi L Schubert; Christopher P Hill
Journal:  Nat Rev Mol Cell Biol       Date:  2005-08       Impact factor: 94.444

9.  Ubiquitination on nonlysine residues by a viral E3 ubiquitin ligase.

Authors:  Ken Cadwell; Laurent Coscoy
Journal:  Science       Date:  2005-07-01       Impact factor: 47.728

10.  The RssB response regulator directly targets sigma(S) for degradation by ClpXP.

Authors:  Y Zhou; S Gottesman; J R Hoskins; M R Maurizi; S Wickner
Journal:  Genes Dev       Date:  2001-03-01       Impact factor: 11.361

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  22 in total

1.  Bacterial ubiquitin-like modifier Pup is deamidated and conjugated to substrates by distinct but homologous enzymes.

Authors:  Frank Striebel; Frank Imkamp; Markus Sutter; Martina Steiner; Azad Mamedov; Eilika Weber-Ban
Journal:  Nat Struct Mol Biol       Date:  2009-05-17       Impact factor: 15.369

2.  Mechanism of substrate unfolding and translocation by the regulatory particle of the proteasome from Methanocaldococcus jannaschii.

Authors:  Fan Zhang; Zhuoru Wu; Ping Zhang; Geng Tian; Daniel Finley; Yigong Shi
Journal:  Mol Cell       Date:  2009-05-14       Impact factor: 17.970

3.  Discovery of cellular regulation by protein degradation.

Authors:  Alexander Varshavsky
Journal:  J Biol Chem       Date:  2008-08-15       Impact factor: 5.157

4.  Proteasomal degradation from internal sites favors partial proteolysis via remote domain stabilization.

Authors:  Daniel A Kraut; Andreas Matouschek
Journal:  ACS Chem Biol       Date:  2011-08-12       Impact factor: 5.100

5.  Molecular determinants of MecA as a degradation tag for the ClpCP protease.

Authors:  Ziqing Mei; Feng Wang; Yutao Qi; Zhiyuan Zhou; Qi Hu; Han Li; Jiawei Wu; Yigong Shi
Journal:  J Biol Chem       Date:  2009-09-18       Impact factor: 5.157

6.  Structure and mechanism of the hexameric MecA-ClpC molecular machine.

Authors:  Feng Wang; Ziqing Mei; Yutao Qi; Chuangye Yan; Qi Hu; Jiawei Wang; Yigong Shi
Journal:  Nature       Date:  2011-03-02       Impact factor: 49.962

7.  Unfolding and translocation pathway of substrate protein controlled by structure in repetitive allosteric cycles of the ClpY ATPase.

Authors:  Andrea Kravats; Manori Jayasinghe; George Stan
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-25       Impact factor: 11.205

Review 8.  Context-dependent resistance to proteolysis of intrinsically disordered proteins.

Authors:  Marcin J Suskiewicz; Joel L Sussman; Israel Silman; Yosef Shaul
Journal:  Protein Sci       Date:  2011-06-08       Impact factor: 6.725

9.  ClpAP is an auxiliary protease for DnaA degradation in Caulobacter crescentus.

Authors:  Jing Liu; Laura I Francis; Kristina Jonas; Michael T Laub; Peter Chien
Journal:  Mol Microbiol       Date:  2016-10-17       Impact factor: 3.501

10.  Substrate-binding sites of UBR1, the ubiquitin ligase of the N-end rule pathway.

Authors:  Zanxian Xia; Ailsa Webster; Fangyong Du; Konstantin Piatkov; Michel Ghislain; Alexander Varshavsky
Journal:  J Biol Chem       Date:  2008-06-19       Impact factor: 5.157

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