Literature DB >> 18272713

Smallpox virus resequencing GeneChips can also rapidly ascertain species status for some zoonotic non-variola orthopoxviruses.

Irshad M Sulaiman1, Scott A Sammons, Robert M Wohlhueter.   

Abstract

We recently developed a set of seven resequencing GeneChips for the rapid sequencing of Variola virus strains in the WHO Repository of the Centers for Disease Control and Prevention. In this study, we attempted to hybridize these GeneChips with some known non-Variola orthopoxvirus isolates, including monkeypox, cowpox, and vaccinia viruses, for rapid detection.

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Year:  2008        PMID： 18272713      PMCID： PMC2292925          DOI： 10.1128/JCM.00158-08

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  8 in total

1.  High-throughput variation detection and genotyping using microarrays.

Authors:  D J Cutler; M E Zwick; M M Carrasquillo; C T Yohn; K P Tobin; C Kashuk; D J Mathews; N A Shah; E E Eichler; J A Warrington; A Chakravarti
Journal:  Genome Res       Date:  2001-11       Impact factor: 9.043

2.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

3.  Evaluation of affymetrix severe acute respiratory syndrome resequencing GeneChips in characterization of the genomes of two strains of coronavirus infecting humans.

Authors:  Irshad M Sulaiman; Xin Liu; Michael Frace; Nikhat Sulaiman; Melissa Olsen-Rasmussen; Elizabeth Neuhaus; Paul A Rota; Robert M Wohlhueter
Journal:  Appl Environ Microbiol       Date:  2006-01       Impact factor: 4.792

4.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

5.  A tale of two clades: monkeypox viruses.

Authors:  Anna M Likos; Scott A Sammons; Victoria A Olson; A Michael Frace; Yu Li; Melissa Olsen-Rasmussen; Whitni Davidson; Renee Galloway; Marina L Khristova; Mary G Reynolds; Hui Zhao; Darin S Carroll; Aaron Curns; Pierre Formenty; Joseph J Esposito; Russell L Regnery; Inger K Damon
Journal:  J Gen Virol       Date:  2005-10       Impact factor: 3.891

6.  GeneChip resequencing of the smallpox virus genome can identify novel strains: a biodefense application.

Authors:  Irshad M Sulaiman; Kevin Tang; John Osborne; Scott Sammons; Robert M Wohlhueter
Journal:  J Clin Microbiol       Date:  2006-12-20       Impact factor: 5.948

7.  Real-time PCR assay to detect smallpox virus.

Authors:  M Sofi Ibrahim; David A Kulesh; Sharron S Saleh; Inger K Damon; Joseph J Esposito; Alan L Schmaljohn; Peter B Jahrling
Journal:  J Clin Microbiol       Date:  2003-08       Impact factor: 5.948

8.  Genome sequence diversity and clues to the evolution of variola (smallpox) virus.

Authors:  Joseph J Esposito; Scott A Sammons; A Michael Frace; John D Osborne; Melissa Olsen-Rasmussen; Ming Zhang; Dhwani Govil; Inger K Damon; Richard Kline; Miriam Laker; Yu Li; Geoffrey L Smith; Hermann Meyer; James W Leduc; Robert M Wohlhueter
Journal:  Science       Date:  2006-07-27       Impact factor: 47.728
  8 in total
  1 in total

1.  Large-scale evolutionary surveillance of the 2009 H1N1 influenza A virus using resequencing arrays.

Authors:  Charlie Wah Heng Lee; Chee Wee Koh; Yang Sun Chan; Pauline Poh Kim Aw; Kuan Hon Loh; Bing Ling Han; Pei Ling Thien; Geraldine Yi Wen Nai; Martin L Hibberd; Christopher W Wong; Wing-Kin Sung
Journal:  Nucleic Acids Res       Date:  2010-02-25       Impact factor: 16.971
  1 in total

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