Literature DB >> 18270080

Robust H infinity-stabilization design in gene networks under stochastic molecular noises: fuzzy-interpolation approach.

Bor-Sen Chen1, Yu-Te Chang, Yu-Chao Wang.   

Abstract

Molecular noises in gene networks come from intrinsic fluctuations, transmitted noise from upstream genes, and the global noise affecting all genes. Knowledge of molecular noise filtering in gene networks is crucial to understand the signal processing in gene networks and to design noise-tolerant gene circuits for synthetic biology. A nonlinear stochastic dynamic model is proposed in describing a gene network under intrinsic molecular fluctuations and extrinsic molecular noises. The stochastic molecular-noise-processing scheme of gene regulatory networks for attenuating these molecular noises is investigated from the nonlinear robust stabilization and filtering perspective. In order to improve the robust stability and noise filtering, a robust gene circuit design for gene networks is proposed based on the nonlinear robust H infinity stochastic stabilization and filtering scheme, which needs to solve a nonlinear Hamilton-Jacobi inequality. However, in order to avoid solving these complicated nonlinear stabilization and filtering problems, a fuzzy approximation method is employed to interpolate several linear stochastic gene networks at different operation points via fuzzy bases to approximate the nonlinear stochastic gene network. In this situation, the method of linear matrix inequality technique could be employed to simplify the gene circuit design problems to improve robust stability and molecular-noise-filtering ability of gene networks to overcome intrinsic molecular fluctuations and extrinsic molecular noises.

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Year:  2008        PMID: 18270080     DOI: 10.1109/TSMCB.2007.906975

Source DB:  PubMed          Journal:  IEEE Trans Syst Man Cybern B Cybern        ISSN: 1083-4419


  10 in total

1.  A systematic design method for robust synthetic biology to satisfy design specifications.

Authors:  Bor-Sen Chen; Chih-Hung Wu
Journal:  BMC Syst Biol       Date:  2009-06-30

2.  On the Interplay between the Evolvability and Network Robustness in an Evolutionary Biological Network: A Systems Biology Approach.

Authors:  Bor-Sen Chen; Ying-Po Lin
Journal:  Evol Bioinform Online       Date:  2011-11-01       Impact factor: 1.625

3.  Robust synthetic biology design: stochastic game theory approach.

Authors:  Bor-Sen Chen; Chia-Hung Chang; Hsiao-Ching Lee
Journal:  Bioinformatics       Date:  2009-05-12       Impact factor: 6.937

4.  A Unifying Mathematical Framework for Genetic Robustness, Environmental Robustness, Network Robustness and their Trade-off on Phenotype Robustness in Biological Networks Part I: Gene Regulatory Networks in Systems and Evolutionary Biology.

Authors:  Bor-Sen Chen; Ying-Po Lin
Journal:  Evol Bioinform Online       Date:  2013-02-26       Impact factor: 1.625

5.  A Unifying Mathematical Framework for Genetic Robustness, Environmental Robustness, Network Robustness and their Trade-offs on Phenotype Robustness in Biological Networks. Part III: Synthetic Gene Networks in Synthetic Biology.

Authors:  Bor-Sen Chen; Ying-Po Lin
Journal:  Evol Bioinform Online       Date:  2013-02-26       Impact factor: 1.625

6.  A Unifying Mathematical Framework for Genetic Robustness, Environmental Robustness, Network Robustness and their Tradeoff on Phenotype Robustness in Biological Networks Part II: Ecological Networks.

Authors:  Bor-Sen Chen; Ying-Po Lin
Journal:  Evol Bioinform Online       Date:  2013-02-26       Impact factor: 1.625

7.  Underlying principles of natural selection in network evolution: systems biology approach.

Authors:  Bor-Sen Chen; Wei-Sheng Wu
Journal:  Evol Bioinform Online       Date:  2007-09-26       Impact factor: 1.625

8.  A systematic molecular circuit design method for gene networks under biochemical time delays and molecular noises.

Authors:  Bor-Sen Chen; Yu-Te Chang
Journal:  BMC Syst Biol       Date:  2008-11-27

9.  Systems biology as an integrated platform for bioinformatics, systems synthetic biology, and systems metabolic engineering.

Authors:  Bor-Sen Chen; Chia-Chou Wu
Journal:  Cells       Date:  2013-10-11       Impact factor: 6.600

10.  The stochastic evolutionary game for a population of biological networks under natural selection.

Authors:  Bor-Sen Chen; Shih-Ju Ho
Journal:  Evol Bioinform Online       Date:  2014-02-16       Impact factor: 1.625

  10 in total

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