Literature DB >> 18266892

Extending the modified bayesian information criterion (mBIC) to dense markers and multiple interval mapping.

Małgorzata Bogdan1, Florian Frommlet, Przemysław Biecek, Riyan Cheng, Jayanta K Ghosh, R W Doerge.   

Abstract

SUMMARY: The modified version of Bayesian Information Criterion (mBIC) is a relatively simple model selection procedure that can be used when locating multiple interacting quantitative trait loci (QTL). Our earlier work demonstrated the statistical properties of mBIC for situations where the average genetic map interval is at least 5 cM. In this work mBIC is adapted to genome searches based on a dense map and, more importantly, to the situation where consecutive QTL and interactions are located by multiple interval mapping. Easy to use formulas for the extended mBIC are given. A simulation study, as well as the analysis of real data, confirm the good properties of the extended mBIC.

Mesh:

Year:  2008        PMID: 18266892     DOI: 10.1111/j.1541-0420.2008.00989.x

Source DB:  PubMed          Journal:  Biometrics        ISSN: 0006-341X            Impact factor:   2.571


  4 in total

1.  Empirical Bayesian elastic net for multiple quantitative trait locus mapping.

Authors:  A Huang; S Xu; X Cai
Journal:  Heredity (Edinb)       Date:  2014-09-10       Impact factor: 3.821

2.  Ghost QTL and hotspots in experimental crosses: novel approach for modeling polygenic effects.

Authors:  Jonas Wallin; Małgorzata Bogdan; Piotr A Szulc; R W Doerge; David O Siegmund
Journal:  Genetics       Date:  2021-03-31       Impact factor: 4.562

3.  Selecting predictive biomarkers from genomic data.

Authors:  Florian Frommlet; Piotr Szulc; Franz König; Malgorzata Bogdan
Journal:  PLoS One       Date:  2022-06-16       Impact factor: 3.752

4.  Variable selection for large p small n regression models with incomplete data: mapping QTL with epistases.

Authors:  Min Zhang; Dabao Zhang; Martin T Wells
Journal:  BMC Bioinformatics       Date:  2008-05-29       Impact factor: 3.169

  4 in total

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