Literature DB >> 18265356

Micrococcal nuclease analysis of chromatin structure.

Ken Zaret1.   

Abstract

This unit describes methodology for using micrococcal nuclease to investigate the presence of nucleosomes at a particular location in chromatin and to map the positions of nucleosomes at various levels of resolution. The approaches are readily adaptable to other probes of chromatin structure that cause DNA cleavage. Results obtained from such chromatin studies provide a structural view of the molecular environment of gene in their native context in cells.

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Year:  2005        PMID: 18265356     DOI: 10.1002/0471142727.mb2101s69

Source DB:  PubMed          Journal:  Curr Protoc Mol Biol        ISSN: 1934-3647


  30 in total

1.  Reversal of heterochromatic silencing of quiescent herpes simplex virus type 1 by ICP0.

Authors:  Michael W Ferenczy; Neal A DeLuca
Journal:  J Virol       Date:  2010-12-29       Impact factor: 5.103

2.  Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes.

Authors:  Zefu Lu; Brigitte T Hofmeister; Christopher Vollmers; Rebecca M DuBois; Robert J Schmitz
Journal:  Nucleic Acids Res       Date:  2017-04-07       Impact factor: 16.971

3.  Time-resolved Global and Chromatin Proteomics during Herpes Simplex Virus Type 1 (HSV-1) Infection.

Authors:  Katarzyna Kulej; Daphne C Avgousti; Simone Sidoli; Christin Herrmann; Ashley N Della Fera; Eui Tae Kim; Benjamin A Garcia; Matthew D Weitzman
Journal:  Mol Cell Proteomics       Date:  2017-02-08       Impact factor: 5.911

Review 4.  Assaying the epigenome in limited numbers of cells.

Authors:  William J Greenleaf
Journal:  Methods       Date:  2014-10-22       Impact factor: 3.608

5.  An EZH2-mediated epigenetic mechanism behind p53-dependent tissue sensitivity to DNA damage.

Authors:  Gamze Kuser-Abali; Lu Gong; Jiawei Yan; Qingqing Liu; Weiqi Zeng; Amanda Williamson; Chuan Bian Lim; Mary Ellen Molloy; John B Little; Lei Huang; Zhi-Min Yuan
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-14       Impact factor: 11.205

6.  High-Resolution Chromatin Profiling Using CUT&RUN.

Authors:  Sarah J Hainer; Thomas G Fazzio
Journal:  Curr Protoc Mol Biol       Date:  2019-01-28

7.  Identification of Open Chromatin Regions in Plant Genomes Using ATAC-Seq.

Authors:  Marko Bajic; Kelsey A Maher; Roger B Deal
Journal:  Methods Mol Biol       Date:  2018

8.  Unusual chromatin structure associated with monoparalogous transcription of the Babesia bovis ves multigene family.

Authors:  Yingling Huang; Yu-Ping Xiao; David R Allred
Journal:  Int J Parasitol       Date:  2012-11-23       Impact factor: 3.981

9.  ATAC-seq: A Method for Assaying Chromatin Accessibility Genome-Wide.

Authors:  Jason D Buenrostro; Beijing Wu; Howard Y Chang; William J Greenleaf
Journal:  Curr Protoc Mol Biol       Date:  2015-01-05

10.  Promoter G-quadruplex folding precedes transcription and is controlled by chromatin.

Authors:  Jiazhen Shen; Dhaval Varshney; Angela Simeone; Xiaoyun Zhang; Santosh Adhikari; David Tannahill; Shankar Balasubramanian
Journal:  Genome Biol       Date:  2021-05-07       Impact factor: 13.583

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