Literature DB >> 18265344

Protein databases on the internet.

Dong Xu1, Ying Xu.   

Abstract

Protein databases have become a crucial part of modern biology. Huge amounts of data for protein structures, functions, and particularly sequences are being generated. Searching databases is often the first step in the study of a new protein. Comparison between proteins and between protein families in databases provides information about the relationship between proteins within a genome or across different species, and hence offers much more information than can be obtained by studying only an isolated protein. In addition, secondary databases derived from experimental databases are also widely available. These databases reorganize and annotate the data or provide predictions. The use of multiple databases often helps researchers understand the structure and function of proteins. Although some protein databases are widely known, they are far from being fully utilized in the protein science community. This unit provides a starting point for readers to explore the potential of protein databases on the Internet.

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Year:  2004        PMID: 18265344      PMCID: PMC3265122          DOI: 10.1002/0471142727.mb1904s68

Source DB:  PubMed          Journal:  Curr Protoc Mol Biol        ISSN: 1934-3647


  56 in total

1.  WHAT IF: a molecular modeling and drug design program.

Authors:  G Vriend
Journal:  J Mol Graph       Date:  1990-03

2.  Macromolecular Crystallographic Information File.

Authors:  P E Bourne; H M Berman; B McMahon; K D Watenpaugh; J D Westbrook; P M Fitzgerald
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

3.  Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design.

Authors:  J Liang; H Edelsbrunner; C Woodward
Journal:  Protein Sci       Date:  1998-09       Impact factor: 6.725

4.  GenBank.

Authors:  D A Benson; M S Boguski; D J Lipman; J Ostell; B F Ouellette; B A Rapp; D L Wheeler
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

5.  PRINTS prepares for the new millennium.

Authors:  T K Attwood; D R Flower; A P Lewis; J E Mabey; S R Morgan; P Scordis; J N Selley; W Wright
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

6.  Proteopedia: a status report on the collaborative, 3D web-encyclopedia of proteins and other biomolecules.

Authors:  Jaime Prilusky; Eran Hodis; David Canner; Wayne A Decatur; Karl Oberholser; Eric Martz; Alexander Berchanski; Michal Harel; Joel L Sussman
Journal:  J Struct Biol       Date:  2011-04-23       Impact factor: 2.867

7.  iProLINK: an integrated protein resource for literature mining.

Authors:  Zhang-Zhi Hu; Inderjeet Mani; Vincent Hermoso; Hongfang Liu; Cathy H Wu
Journal:  Comput Biol Chem       Date:  2004-12       Impact factor: 2.877

8.  PSORTdb--an expanded, auto-updated, user-friendly protein subcellular localization database for Bacteria and Archaea.

Authors:  Nancy Y Yu; Matthew R Laird; Cory Spencer; Fiona S L Brinkman
Journal:  Nucleic Acids Res       Date:  2010-11-10       Impact factor: 16.971

9.  Ongoing and future developments at the Universal Protein Resource.

Authors: 
Journal:  Nucleic Acids Res       Date:  2010-11-04       Impact factor: 16.971

10.  SMART 6: recent updates and new developments.

Authors:  Ivica Letunic; Tobias Doerks; Peer Bork
Journal:  Nucleic Acids Res       Date:  2008-10-31       Impact factor: 16.971

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  2 in total

Review 1.  DBHR: a collection of databases relevant to human research.

Authors:  Shahid Ullah; Wajeeha Rahman; Farhan Ullah; Gulzar Ahmad; Muhmmad Ijaz; Tianshun Gao
Journal:  Future Sci OA       Date:  2021-01-20

Review 2.  Studying Smaller and Neglected Organisms in Modern Evolutionary Venomics Implementing RNASeq (Transcriptomics)-A Critical Guide.

Authors:  Björn Marcus von Reumont
Journal:  Toxins (Basel)       Date:  2018-07-16       Impact factor: 4.546

  2 in total

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