Literature DB >> 18265183

Preparation of genomic DNA from plant tissue.

E Richards1, M Reichardt, S Rogers.   

Abstract

This unit describes two methods for preparing genomic DNA from plant tissue. In the first method, plant cells are lysed with ionic detergent, treated with protease, and subsequently purified by cesium chloride (CsCl) density gradient centrifugation. The second method is based upon a series of treatments with the nonionic detergent cetyltrimethylammonium bromide (CTAB) to lyse cells and purify nucleic acid. Nucleic acid is recovered from the final CTAB solution by isopropanol or ethanol precipitation. The first method, although somewhat more lengthy, results in highly purified nucleic acid. The second method requires fewer manipulations, results in very high yields (approximately 10-fold higher per gram fresh tissue depending on species and condition of starting material), and produces DNA that is less pure but nonetheless suitable in quality for use in many molecular biology manipulations.

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Year:  2001        PMID: 18265183     DOI: 10.1002/0471142727.mb0203s27

Source DB:  PubMed          Journal:  Curr Protoc Mol Biol        ISSN: 1934-3647


  18 in total

1.  Reconstructing de novo silencing of an active plant retrotransposon.

Authors:  Arturo Marí-Ordóñez; Antonin Marchais; Mathilde Etcheverry; Antoine Martin; Vincent Colot; Olivier Voinnet
Journal:  Nat Genet       Date:  2013-07-14       Impact factor: 38.330

2.  CYP719A subfamily of cytochrome P450 oxygenases and isoquinoline alkaloid biosynthesis in Eschscholzia californica.

Authors:  Nobuhiro Ikezawa; Kinuko Iwasa; Fumihiko Sato
Journal:  Plant Cell Rep       Date:  2008-10-15       Impact factor: 4.570

3.  New natural products isolated from Metarhizium robertsii ARSEF 23 by chemical screening and identification of the gene cluster through engineered biosynthesis in Aspergillus nidulans A1145.

Authors:  Hiroki Kato; Yuta Tsunematsu; Tsuyoshi Yamamoto; Takuya Namiki; Shinji Kishimoto; Hiroshi Noguchi; Kenji Watanabe
Journal:  J Antibiot (Tokyo)       Date:  2016-05-18       Impact factor: 2.649

4.  Gene targeting in polymerase theta-deficient Arabidopsis thaliana.

Authors:  Niels van Tol; Robin van Schendel; Alex Bos; Maartje van Kregten; Sylvia de Pater; Paul J J Hooykaas; Marcel Tijsterman
Journal:  Plant J       Date:  2021-11-18       Impact factor: 7.091

5.  LIFE-Seq: a universal Large Integrated DNA Fragment Enrichment Sequencing strategy for deciphering the transgene integration of genetically modified organisms.

Authors:  Hanwen Zhang; Rong Li; Yongkun Guo; Yuchen Zhang; Dabing Zhang; Litao Yang
Journal:  Plant Biotechnol J       Date:  2022-02-01       Impact factor: 13.263

6.  A genomic perspective on the important genetic mechanisms of upland adaptation of rice.

Authors:  Jun Lyu; Baoye Li; Weiming He; Shilai Zhang; Zhiheng Gou; Jing Zhang; Liyun Meng; Xin Li; Dayun Tao; Wangqi Huang; Fengyi Hu; Wen Wang
Journal:  BMC Plant Biol       Date:  2014-06-11       Impact factor: 4.215

7.  Mutations in SACPD-C result in a range of elevated stearic acid concentration in soybean seed.

Authors:  Militza Carrero-Colón; Nathan Abshire; Daniel Sweeney; Erik Gaskin; Karen Hudson
Journal:  PLoS One       Date:  2014-05-20       Impact factor: 3.240

8.  A high throughput DNA extraction method with high yield and quality.

Authors:  Zhanguo Xin; Junping Chen
Journal:  Plant Methods       Date:  2012-07-28       Impact factor: 4.993

9.  Volatile organic compounds in truffle (Tuber magnatum Pico): comparison of samples from different regions of Italy and from different seasons.

Authors:  Federico Vita; Cosimo Taiti; Antonio Pompeiano; Nadia Bazihizina; Valentina Lucarotti; Stefano Mancuso; Amedeo Alpi
Journal:  Sci Rep       Date:  2015-07-30       Impact factor: 4.379

10.  Genome-wide investigation of genetic changes during modern breeding of Brassica napus.

Authors:  Nian Wang; Feng Li; Biyun Chen; Kun Xu; Guixin Yan; Jiangwei Qiao; Jun Li; Guizhen Gao; Ian Bancroft; Jingling Meng; Graham J King; Xiaoming Wu
Journal:  Theor Appl Genet       Date:  2014-06-20       Impact factor: 5.699

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