Literature DB >> 18262474

Genomic resources for invertebrate vectors of human pathogens, and the role of VectorBase.

K Megy1, M Hammond, D Lawson, R V Bruggner, E Birney, F H Collins.   

Abstract

High-throughput genome sequencing techniques have now reached vector biology with an emphasis on those species that are vectors of human pathogens. The first mosquito to be sequenced was Anopheles gambiae, the vector for Plasmodium parasites that cause malaria. Further mosquitoes have followed: Aedes aegypti (yellow fever and dengue fever vector) and Culex pipiens (lymphatic filariasis and West Nile fever). Species that are currently in sequencing include the body louse Pediculus humanus (Typhus vector), the triatomine Rhodnius prolixus (Chagas disease vector) and the tick Ixodes scapularis (Lyme disease vector). The motivations for sequencing vector genomes are to further understand vector biology, with an eye on developing new control strategies (for example novel chemical attractants or repellents) or understanding the limitations of current strategies (for example the mechanism of insecticide resistance); to analyse the mechanisms driving their evolution; and to perform an exhaustive analysis of the gene repertory. The proliferation of genomic data creates the need for efficient and accessible storage. We present VectorBase, a genomic resource centre that is both involved in the annotation of vector genomes and act as a portal for access to the genomic information (http://www.vectorbase.org).

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Year:  2008        PMID: 18262474      PMCID: PMC2720521          DOI: 10.1016/j.meegid.2007.12.007

Source DB:  PubMed          Journal:  Infect Genet Evol        ISSN: 1567-1348            Impact factor:   3.342


  41 in total

Review 1.  Use of the piggyBac transposon for germ-line transformation of insects.

Authors:  Alfred M Handler
Journal:  Insect Biochem Mol Biol       Date:  2002-10       Impact factor: 4.714

2.  Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo.

Authors:  Julia Zeitlinger; Robert P Zinzen; Alexander Stark; Manolis Kellis; Hailan Zhang; Richard A Young; Michael Levine
Journal:  Genes Dev       Date:  2007-02-15       Impact factor: 11.361

3.  piggyBac-mediated germline transformation of the malaria mosquito Anopheles stephensi using the red fluorescent protein dsRED as a selectable marker.

Authors:  Tony Nolan; Tom M Bower; Anthony E Brown; Andrea Crisanti; Flaminia Catteruccia
Journal:  J Biol Chem       Date:  2002-01-22       Impact factor: 5.157

4.  An insight into the sialome of the adult female mosquito Aedes albopictus.

Authors:  Bruno Arcà; Fabrizio Lombardo; Ivo M B Francischetti; Van My Pham; Montserrat Mestres-Simon; John F Andersen; José M C Ribeiro
Journal:  Insect Biochem Mol Biol       Date:  2006-11-07       Impact factor: 4.714

5.  An insight into the sialome of Anopheles funestus reveals an emerging pattern in anopheline salivary protein families.

Authors:  Eric Calvo; Adama Dao; Van M Pham; José M C Ribeiro
Journal:  Insect Biochem Mol Biol       Date:  2006-11-22       Impact factor: 4.714

6.  Transcriptome analysis of Anopheles stephensi-Plasmodium berghei interactions.

Authors:  Xiaojin Xu; Yuemei Dong; Eappen G Abraham; Anna Kocan; Prakash Srinivasan; Anil K Ghosh; Robert E Sinden; Jose M C Ribeiro; Marcelo Jacobs-Lorena; Fotis C Kafatos; George Dimopoulos
Journal:  Mol Biochem Parasitol       Date:  2005-04-12       Impact factor: 1.759

7.  Formation and loss of large, unstable tandem arrays of the piggyBac transposable element in the yellow fever mosquito, Aedes aegypti.

Authors:  Zach N Adelman; Nijole Jasinskiene; K J M Vally; Corrie Peek; Emily A Travanty; Ken E Olson; Susan E Brown; Janice L Stephens; Dennis L Knudson; Craig J Coates; Anthony A James
Journal:  Transgenic Res       Date:  2004-10       Impact factor: 2.788

8.  Microarray-based survey of a subset of putative olfactory genes in the mosquito Anopheles gambiae.

Authors:  H Biessmann; Q K Nguyen; D Le; M F Walter
Journal:  Insect Mol Biol       Date:  2005-12       Impact factor: 3.585

9.  The sialotranscriptome of the blood-sucking bug Triatoma brasiliensis (Hemiptera, Triatominae).

Authors:  Adriana Santos; José Marcos C Ribeiro; Michael J Lehane; Nelder Figueiredo Gontijo; Artur Botelho Veloso; Mauricio R V Sant'Anna; Ricardo Nascimento Araujo; Edmundo C Grisard; Marcos Horácio Pereira
Journal:  Insect Biochem Mol Biol       Date:  2007-04-14       Impact factor: 4.714

10.  Tick genomics: the Ixodes genome project and beyond.

Authors:  J Pagel Van Zee; N S Geraci; F D Guerrero; S K Wikel; J J Stuart; V M Nene; C A Hill
Journal:  Int J Parasitol       Date:  2007-06-09       Impact factor: 3.981

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  7 in total

1.  A set of ontologies to drive tools for the control of vector-borne diseases.

Authors:  Pantelis Topalis; Emmanuel Dialynas; Elvira Mitraka; Elena Deligianni; Inga Siden-Kiamos; Christos Louis
Journal:  J Biomed Inform       Date:  2010-04-02       Impact factor: 6.317

Review 2.  Genetics and evolution of triatomines: from phylogeny to vector control.

Authors:  S Gourbière; P Dorn; F Tripet; E Dumonteil
Journal:  Heredity (Edinb)       Date:  2011-09-07       Impact factor: 3.821

3.  Validation of reference genes for expression analysis in the salivary gland and the intestine of Rhodnius prolixus (Hemiptera, Reduviidae) under different experimental conditions by quantitative real-time PCR.

Authors:  Rafaela M Paim; Marcos H Pereira; Raffaello Di Ponzio; Juliana O Rodrigues; Alessandra A Guarneri; Nelder F Gontijo; Ricardo N Araújo
Journal:  BMC Res Notes       Date:  2012-03-06

4.  Temporal Gene Expression Profiles of Pre Blood-Fed Adult Females Immediately Following Eclosion in the Southern House Mosquito Culex Quinquefasciatus.

Authors:  William R Reid; Lee Zhang; Nannan Liu
Journal:  Int J Biol Sci       Date:  2015-09-20       Impact factor: 6.580

5.  Ixodes scapularis tick serine proteinase inhibitor (serpin) gene family; annotation and transcriptional analysis.

Authors:  Albert Mulenga; Rabuesak Khumthong; Katelyn C Chalaire
Journal:  BMC Genomics       Date:  2009-05-12       Impact factor: 3.969

6.  The transcriptome profile of the mosquito Culex quinquefasciatus following permethrin selection.

Authors:  William R Reid; Lee Zhang; Feng Liu; Nannan Liu
Journal:  PLoS One       Date:  2012-10-05       Impact factor: 3.240

7.  Reciprocal regulation of NF-kB (Relish) and Subolesin in the tick vector, Ixodes scapularis.

Authors:  Victoria Naranjo; Nieves Ayllón; José M Pérez de la Lastra; Ruth C Galindo; Katherine M Kocan; Edmour F Blouin; Ruchira Mitra; Pilar Alberdi; Margarita Villar; José de la Fuente
Journal:  PLoS One       Date:  2013-06-12       Impact factor: 3.240

  7 in total

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