Literature DB >> 18260106

Apo-parvalbumin as an intrinsically disordered protein.

Sergei E Permyakov1, Anush G Bakunts, Alexander I Denesyuk, Ekaterina L Knyazeva, Vladimir N Uversky, Eugene A Permyakov.   

Abstract

Recently defined family of intrinsically disordered proteins (IDP) includes proteins lacking rigid tertiary structure meanwhile fulfilling essential biological functions. Here we show that apo-state of pike parvalbumin (alpha- and beta-isoforms, pI 5.0 and 4.2, respectively) belongs to the family of IDP, which is in accord with theoretical predictions. Parvalbumin (PA) is a 12-kDa calcium-binding protein involved into regulation of relaxation of fast muscles. Differential scanning calorimetry measurements of metal-depleted form of PA revealed the absence of any thermally induced transitions with measurable denaturation enthalpy along with elevated specific heat capacity, implying the lack of rigid tertiary structure and exposure of hydrophobic protein groups to the solvent. Calcium removal from the PAs causes more than 10-fold increase in fluorescence intensity of hydrophobic probe bis-ANS and is accompanied by a decrease in alpha-helical content and a marked increase in mobility of aromatic residues environment, as judged by circular dichroism spectroscopy (CD). Guanidinium chloride-induced unfolding of the apo-parvalbumins monitored by CD showed the lack of fixed tertiary structure. Theoretical estimation of energetics of the charge-charge interactions in the PAs indicated their pronounced destabilization upon calcium removal, which is in line with sequence-based predictions of disordered protein chain regions. Far-UV CD studies of apo-alpha-PA revealed hallmarks of cold denaturation of the protein at temperatures below 20 degrees C. Moreover, a cooperative thermal denaturation transition with mid-temperature at 10-15 degrees C is revealed by near-UV CD for both PAs. The absence of detectable enthalpy change in this temperature region suggests continuous nature of the transition. Overall, the theoretical and experimental data obtained show that PA in apo-state is essentially disordered nevertheless demonstrates complex denaturation behavior. The native rigid tertiary structure of PA is attained upon association of one (alpha-PA) or two (beta-PA) calcium ions per protein molecule, as follows from calorimetric and calcium titration data.

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Year:  2008        PMID: 18260106     DOI: 10.1002/prot.21974

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  14 in total

Review 1.  Intrinsically disordered proteins and their environment: effects of strong denaturants, temperature, pH, counter ions, membranes, binding partners, osmolytes, and macromolecular crowding.

Authors:  Vladimir N Uversky
Journal:  Protein J       Date:  2009-10       Impact factor: 2.371

2.  Conserved noncanonical residue Gly-126 confers instability to the middle part of the tropomyosin molecule.

Authors:  Ilya A Nevzorov; Olga P Nikolaeva; Yaroslav A Kainov; Charles S Redwood; Dmitrii I Levitsky
Journal:  J Biol Chem       Date:  2011-03-14       Impact factor: 5.157

3.  Temperature and solvent dependence of the dynamical landscape of tau protein conformations.

Authors:  Antonio Bianconi; Gabriele Ciasca; Alexander Tenenbaum; Anna Battisti; Gaetano Campi
Journal:  J Biol Phys       Date:  2011-11-16       Impact factor: 1.365

4.  Structural characteristics of the plasmid-encoded toxin from enteroaggregative Escherichia coli.

Authors:  Patricia Scaglione; Kathleen N Nemec; Kaitlin E Burlingame; Agnieszka Grabon; Jazmin Huerta; Fernando Navarro-Garcia; Suren A Tatulian; Ken Teter
Journal:  Biochemistry       Date:  2008-08-15       Impact factor: 3.162

5.  Metal-controlled interdomain cooperativity in parvalbumins.

Authors:  Sergei E Permyakov; Anush G Bakunts; Maria E Permyakova; Alexander I Denesyuk; Vladimir N Uversky; Eugene A Permyakov
Journal:  Cell Calcium       Date:  2009-08-03       Impact factor: 6.817

Review 6.  Fish allergens at a glance: variable allergenicity of parvalbumins, the major fish allergens.

Authors:  Annette Kuehn; Ines Swoboda; Karthik Arumugam; Christiane Hilger; François Hentges
Journal:  Front Immunol       Date:  2014-04-22       Impact factor: 7.561

7.  Two structural motifs within canonical EF-hand calcium-binding domains identify five different classes of calcium buffers and sensors.

Authors:  Konstantin Denessiouk; Sergei Permyakov; Alexander Denesyuk; Eugene Permyakov; Mark S Johnson
Journal:  PLoS One       Date:  2014-10-14       Impact factor: 3.240

8.  Calcium Binding and Disulfide Bonds Regulate the Stability of Secretagogin towards Thermal and Urea Denaturation.

Authors:  Kalyani Sanagavarapu; Tanja Weiffert; Niamh Ní Mhurchú; David O'Connell; Sara Linse
Journal:  PLoS One       Date:  2016-11-03       Impact factor: 3.240

9.  Extremophilic 50S Ribosomal RNA-Binding Protein L35Ae as a Basis for Engineering of an Alternative Protein Scaffold.

Authors:  Anna V Lomonosova; Elena V Ovchinnikova; Alexei S Kazakov; Alexander I Denesyuk; Alexander D Sofin; Roman V Mikhailov; Andrei B Ulitin; Tajib A Mirzabekov; Eugene A Permyakov; Sergei E Permyakov
Journal:  PLoS One       Date:  2015-08-06       Impact factor: 3.240

10.  Small Angle Neutron Scattering Studies of R67 Dihydrofolate Reductase, a Tetrameric Protein with Intrinsically Disordered N-Termini.

Authors:  Purva P Bhojane; Michael R Duff; Khushboo Bafna; Pratul Agarwal; Christopher Stanley; Elizabeth E Howell
Journal:  Biochemistry       Date:  2017-11-07       Impact factor: 3.162

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