Literature DB >> 18249180

HIVcleave: a web-server for predicting human immunodeficiency virus protease cleavage sites in proteins.

Hong-Bin Shen1, Kuo-Chen Chou.   

Abstract

According to the ''distorted key theory'' [K.C. Chou, Analytical Biochemistry, 233 (1996) 1-14], the information of cleavage sites of proteins by HIV (human immunodeficiency virus) protease is very useful for finding effective inhibitors against HIV, the culprit of AIDS (acquired immunodeficiency syndrome). To meet the increasing need in this regard, a web-server called HIVcleave was established at http://chou.med.harvard.edu/bioinf/HIV/. In this note we provide a step-to-step guide for how to use HIVcleave to identify the cleavage sites of a query protein sequence by HIV-1 and HIV-2 proteases, respectively.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18249180     DOI: 10.1016/j.ab.2008.01.012

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  24 in total

1.  Prediction of metalloproteinase family based on the concept of Chou's pseudo amino acid composition using a machine learning approach.

Authors:  Majid Mohammad Beigi; Mohaddeseh Behjati; Hassan Mohabatkar
Journal:  J Struct Funct Genomics       Date:  2011-12-03

2.  PROSPERous: high-throughput prediction of substrate cleavage sites for 90 proteases with improved accuracy.

Authors:  Jiangning Song; Fuyi Li; André Leier; Tatiana T Marquez-Lago; Tatsuya Akutsu; Gholamreza Haffari; Kuo-Chen Chou; Geoffrey I Webb; Robert N Pike; John Hancock
Journal:  Bioinformatics       Date:  2018-02-15       Impact factor: 6.937

Review 3.  Some illuminating remarks on molecular genetics and genomics as well as drug development.

Authors:  Kuo-Chen Chou
Journal:  Mol Genet Genomics       Date:  2020-01-01       Impact factor: 3.291

4.  Study of peptide fingerprints of parasite proteins and drug-DNA interactions with Markov-Mean-Energy invariants of biopolymer molecular-dynamic lattice networks.

Authors:  Lázaro Guillermo Pérez-Montoto; María Auxiliadora Dea-Ayuela; Francisco J Prado-Prado; Francisco Bolas-Fernández; Florencio M Ubeira; Humberto González-Díaz
Journal:  Polymer (Guildf)       Date:  2009-06-03       Impact factor: 4.430

5.  Comparative docking study of anibamine as the first natural product CCR5 antagonist in CCR5 homology models.

Authors:  Guo Li; Kendra M Haney; Glen E Kellogg; Yan Zhang
Journal:  J Chem Inf Model       Date:  2009-01       Impact factor: 4.956

6.  NS2B/3 proteolysis at the C-prM junction of the tick-borne encephalitis virus polyprotein is highly membrane dependent.

Authors:  Martina Kurz; Nikolas Stefan; Junping Zhu; Tim Skern
Journal:  Virus Res       Date:  2012-06-19       Impact factor: 3.303

7.  Identification of potent EGFR inhibitors from TCM Database@Taiwan.

Authors:  Shun-Chieh Yang; Su-Sen Chang; Hsin-Yi Chen; Calvin Yu-Chian Chen
Journal:  PLoS Comput Biol       Date:  2011-10-13       Impact factor: 4.475

8.  How to find simple and accurate rules for viral protease cleavage specificities.

Authors:  Thorsteinn Rögnvaldsson; Terence A Etchells; Liwen You; Daniel Garwicz; Ian Jarman; Paulo J G Lisboa
Journal:  BMC Bioinformatics       Date:  2009-05-16       Impact factor: 3.169

9.  Protein domain boundary predictions: a structural biology perspective.

Authors:  Svetlana Kirillova; Suresh Kumar; Oliviero Carugo
Journal:  Open Biochem J       Date:  2009-01-21

10.  Find novel dual-agonist drugs for treating type 2 diabetes by means of cheminformatics.

Authors:  Lei Liu; Ying Ma; Run-Ling Wang; Wei-Ren Xu; Shu-Qing Wang; Kuo-Chen Chou
Journal:  Drug Des Devel Ther       Date:  2013-04-08       Impact factor: 4.162

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.