Literature DB >> 18248243

Genomic resources for Xiphophorus research.

Ronald B Walter1, Zhenlin Ju, Al Martinez, Chris Amemiya, Paul B Samollow.   

Abstract

Xiphophorus fishes and interspecies hybrids are used in many areas of contemporary research. Due to their high degree of heterozygosity Xiphophorus interspecies hybrids are extremely valuable models for molecular genetic study of gene regulation in physiology and behavior. Historically, Xiphophorus fish have made a contribution to understanding the genetics underlying tumorigenesis but the role this experimental model system may play in contemporary comparative biology has only just begun to be realized. In spite of many advantages a genome-level Xiphophorus sequencing project has not yet been initiated. In order to set a stage for a genome-level initiative, many Xiphophorus resources have recently been, or are currently being developed. Recent completion of the Xiphophorus gene linkage map, construction of microsatellite marker and EST databases, and the accessibility of BAC library resources hallmark the progress in development of genomic capabilities for Xiphophorus investigations. Herein we review current Xiphophorus genomic resources and to provide the reader with information that will enable them to access these resources available to enhance their investigations.

Entities:  

Year:  2006        PMID: 18248243     DOI: 10.1089/zeb.2006.3.11

Source DB:  PubMed          Journal:  Zebrafish        ISSN: 1545-8547            Impact factor:   1.985


  9 in total

1.  Production of F₁ offspring with vitrified sperm from a live-bearing fish, the green swordtail Xiphophorus hellerii.

Authors:  Rafael Cuevas-Uribe; Huiping Yang; Jonathan Daly; Markita G Savage; Ronald B Walter; Terrence R Tiersch
Journal:  Zebrafish       Date:  2011-09-01       Impact factor: 1.985

2.  Acute exposure to ultraviolet-B radiation modulates sex steroid hormones and receptor expression in the skin and may contribute to the sex bias of melanoma in a fish model.

Authors:  David L Mitchell; André A Fernandez; Rachel Garcia; Lakshmi Paniker; Kevin Lin; Amanda Hanninen; Kyle Zigelsky; Matthew May; Mark Nuttall; Herng-Hsiang Lo; Maria D Person; Ryan Earley
Journal:  Pigment Cell Melanoma Res       Date:  2014-02-03       Impact factor: 4.693

3.  Offspring production with cryopreserved sperm from a live-bearing fish Xiphophorus maculatus and implications for female fecundity.

Authors:  Huiping Yang; Markita G Savage; Leona Hazlewood; Ronald B Walter; Terrence R Tiersch
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2011-05-15       Impact factor: 3.228

4.  Characterization of telomeres and telomerase expression in Xiphophorus.

Authors:  Kevin P Downs; Yingjia Shen; Amanda Pasquali; Ion Beldorth; Markita Savage; Katelyn Gallier; Tzintzuni Garcia; Rachell E Booth; Ronald B Walter
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2011-05-18       Impact factor: 3.228

5.  Effects of short read quality and quantity on a de novo vertebrate transcriptome assembly.

Authors:  T I Garcia; Y Shen; J Catchen; A Amores; M Schartl; J Postlethwait; R B Walter
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2011-06-01       Impact factor: 3.228

6.  Identification of transcriptome SNPs between Xiphophorus lines and species for assessing allele specific gene expression within F₁ interspecies hybrids.

Authors:  Yingjia Shen; Julian Catchen; Tzintzuni Garcia; Angel Amores; Ion Beldorth; Jonathan Wagner; Ziping Zhang; John Postlethwait; Wes Warren; Manfred Schartl; Ronald B Walter
Journal:  Comp Biochem Physiol C Toxicol Pharmacol       Date:  2011-04-03       Impact factor: 3.228

Review 7.  Genetic and environmental melanoma models in fish.

Authors:  E Elizabeth Patton; David L Mitchell; Rodney S Nairn
Journal:  Pigment Cell Melanoma Res       Date:  2010-03-08       Impact factor: 4.693

8.  Genomic organization of duplicated short wave-sensitive and long wave-sensitive opsin genes in the green swordtail, Xiphophorus helleri.

Authors:  Corey T Watson; Krzysztof P Lubieniecki; Ellis Loew; William S Davidson; Felix Breden
Journal:  BMC Evol Biol       Date:  2010-03-30       Impact factor: 3.260

9.  X. couchianus and X. hellerii genome models provide genomic variation insight among Xiphophorus species.

Authors:  Yingjia Shen; Domitille Chalopin; Tzintzuni Garcia; Mikki Boswell; William Boswell; Sergey A Shiryev; Richa Agarwala; Jean-Nicolas Volff; John H Postlethwait; Manfred Schartl; Patrick Minx; Wesley C Warren; Ronald B Walter
Journal:  BMC Genomics       Date:  2016-01-07       Impact factor: 3.969

  9 in total

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