Literature DB >> 18246076

Extending the NMR spatial resolution limit for RNA by motional couplings.

Qi Zhang1, Hashim M Al-Hashimi.   

Abstract

Experimental resolution of distinct dynamical processes in molecules can prove impossible when they are correlated to one another. In nuclear magnetic resonance (NMR) spectroscopy, couplings between internal and overall motions lead to intractable complexity, depriving insights into functionally important motions. Here we demonstrate that motional couplings can be used to anchor NMR frames of reference onto different parts of an RNA molecule, thus extending the spatial resolution limit for dynamical characterization.

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Year:  2008        PMID: 18246076     DOI: 10.1038/nmeth.1180

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  18 in total

1.  3D maps of RNA interhelical junctions.

Authors:  Maximillian H Bailor; Anthony M Mustoe; Charles L Brooks; Hashim M Al-Hashimi
Journal:  Nat Protoc       Date:  2011-09-15       Impact factor: 13.491

Review 2.  NMR studies of dynamic biomolecular conformational ensembles.

Authors:  Dennis A Torchia
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2014-11-28       Impact factor: 9.795

3.  Extensive backbone dynamics in the GCAA RNA tetraloop analyzed using 13C NMR spin relaxation and specific isotope labeling.

Authors:  James E Johnson; Charles G Hoogstraten
Journal:  J Am Chem Soc       Date:  2008-12-10       Impact factor: 15.419

Review 4.  Characterizing RNA dynamics at atomic resolution using solution-state NMR spectroscopy.

Authors:  Jameson R Bothe; Evgenia N Nikolova; Catherine D Eichhorn; Jeetender Chugh; Alexandar L Hansen; Hashim M Al-Hashimi
Journal:  Nat Methods       Date:  2011-10-28       Impact factor: 28.547

Review 5.  RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.

Authors:  Jiří Šponer; Giovanni Bussi; Miroslav Krepl; Pavel Banáš; Sandro Bottaro; Richard A Cunha; Alejandro Gil-Ley; Giovanni Pinamonti; Simón Poblete; Petr Jurečka; Nils G Walter; Michal Otyepka
Journal:  Chem Rev       Date:  2018-01-03       Impact factor: 60.622

6.  Theory of nonrigid rotational motion applied to NMR relaxation in RNA.

Authors:  Prashant S Emani; Gregory L Olsen; Gabriele Varani; Gary P Drobny
Journal:  J Phys Chem A       Date:  2011-10-17       Impact factor: 2.781

7.  Approximate reconstruction of continuous spatially complex domain motions by multialignment NMR residual dipolar couplings.

Authors:  Charles K Fisher; Hashim M Al-Hashimi
Journal:  J Phys Chem B       Date:  2009-05-07       Impact factor: 2.991

8.  A general method for constructing atomic-resolution RNA ensembles using NMR residual dipolar couplings: the basis for interhelical motions revealed.

Authors:  Loïc Salmon; Gavin Bascom; Ioan Andricioaei; Hashim M Al-Hashimi
Journal:  J Am Chem Soc       Date:  2013-03-28       Impact factor: 15.419

9.  Preparation, resonance assignment, and preliminary dynamics characterization of residue specific 13C/15N-labeled elongated DNA for the study of sequence-directed dynamics by NMR.

Authors:  Evgenia N Nikolova; Hashim M Al-Hashimi
Journal:  J Biomol NMR       Date:  2009-07-28       Impact factor: 2.835

10.  Variable helix elongation as a tool to modulate RNA alignment and motional couplings.

Authors:  Elizabeth A Dethoff; Alexandar L Hansen; Qi Zhang; Hashim M Al-Hashimi
Journal:  J Magn Reson       Date:  2009-09-30       Impact factor: 2.229

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