Literature DB >> 18245877

An automatic translation of SBML into Beta-binders.

Federica Ciocchetta1, Corrado Priami, Paola Quaglia.   

Abstract

A translation of Systems Biology Markup Language (SBML) into a process algebra is proposed in order to allow the formal specification, the simulation and the formal analysis of biological models. Beta-binders, a language with a quantitative stochastic extension, is chosen for the translation. The proposed translation focuses on the main components of SBML models, as species and reactions. Furthermore, it satisfies the compositional property, i.e. the translation of the whole model is obtained by composing the translation of the subcomponents. An automatic translator tool of SBML models into Beta-binders has been implemented as well. Finally, the translation of a simple model is reported.

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Year:  2008        PMID: 18245877     DOI: 10.1109/TCBB.2007.70219

Source DB:  PubMed          Journal:  IEEE/ACM Trans Comput Biol Bioinform        ISSN: 1545-5963            Impact factor:   3.710


  1 in total

Review 1.  The executable pathway to biological networks.

Authors:  Jasmin Fisher; Nir Piterman
Journal:  Brief Funct Genomics       Date:  2010-01       Impact factor: 4.241

  1 in total

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