| Literature DB >> 18245877 |
Federica Ciocchetta1, Corrado Priami, Paola Quaglia.
Abstract
A translation of Systems Biology Markup Language (SBML) into a process algebra is proposed in order to allow the formal specification, the simulation and the formal analysis of biological models. Beta-binders, a language with a quantitative stochastic extension, is chosen for the translation. The proposed translation focuses on the main components of SBML models, as species and reactions. Furthermore, it satisfies the compositional property, i.e. the translation of the whole model is obtained by composing the translation of the subcomponents. An automatic translator tool of SBML models into Beta-binders has been implemented as well. Finally, the translation of a simple model is reported.Mesh:
Substances:
Year: 2008 PMID: 18245877 DOI: 10.1109/TCBB.2007.70219
Source DB: PubMed Journal: IEEE/ACM Trans Comput Biol Bioinform ISSN: 1545-5963 Impact factor: 3.710