Literature DB >> 18241790

Preparation and evaluation of acylated tRNAs.

Sarah E Walker1, Kurt Fredrick.   

Abstract

In the cell, the activity of tRNA is governed by its acylation state. Interactions with the ribosome, translation factors, and regulatory elements are strongly influenced by the acyl group, and presumably other cellular components that interact with tRNA also use the acyl group as a specificity determinant. Thus, those using biochemical approaches to study any aspect of tRNA biology should be familiar with effective methods to prepare and evaluate acylated tRNA reagents. Here, methods to prepare aminoacyl-tRNA, N-acetyl-aminoacyl-tRNA, and fMet-tRNA(fMet) and to assess their homogeneity are described. Using these methods, acylated tRNAs of high homogeneity can be reliably obtained.

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Year:  2008        PMID: 18241790      PMCID: PMC2276730          DOI: 10.1016/j.ymeth.2007.09.003

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  27 in total

1.  Energetic contribution of tRNA hybrid state formation to translocation catalysis on the ribosome.

Authors:  Y P Semenkov; M V Rodnina; W Wintermeyer
Journal:  Nat Struct Biol       Date:  2000-11

2.  Accurate translocation of mRNA by the ribosome requires a peptidyl group or its analog on the tRNA moving into the 30S P site.

Authors:  Kurt Fredrick; Harry F Noller
Journal:  Mol Cell       Date:  2002-05       Impact factor: 17.970

Review 3.  Initiator tRNA and its role in initiation of protein synthesis.

Authors:  C Mayer; A Stortchevoi; C Köhrer; U Varshney; U L RajBhandary
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2001

4.  Contribution of the esterified amino acid to the binding of aminoacylated tRNAs to the ribosomal P- and A-sites.

Authors:  Richard P Fahlman; Olke C Uhlenbeck
Journal:  Biochemistry       Date:  2004-06-15       Impact factor: 3.162

Review 5.  Aminoacyl-tRNAs: setting the limits of the genetic code.

Authors:  Michael Ibba; Dieter Söll
Journal:  Genes Dev       Date:  2004-04-01       Impact factor: 11.361

6.  Identification of two distinct hybrid state intermediates on the ribosome.

Authors:  James B Munro; Roger B Altman; Nathan O'Connor; Scott C Blanchard
Journal:  Mol Cell       Date:  2007-02-23       Impact factor: 17.970

7.  Effects of amino acid structure, ionic strength, and magnesium ion concentration on rates of nonenzymic hydrolysis of aminoacyl transfer ribonucleic acid.

Authors:  J E Strickland; K B Jacobson
Journal:  Biochemistry       Date:  1972-06-06       Impact factor: 3.162

8.  On the chemical reactivity of aminoacyl-tRNA ester bond. I. Influence of pH and nature of the acyl group on the rate of hydrolysis.

Authors:  F Schuber; M Pinck
Journal:  Biochimie       Date:  1974       Impact factor: 4.079

9.  Separation of transfer ribonucleic acid by sepharose chromatography using reverse salt gradients.

Authors:  W M Holmes; R E Hurd; B R Reid; R A Rimerman; G W Hatfield
Journal:  Proc Natl Acad Sci U S A       Date:  1975-03       Impact factor: 11.205

10.  Relation between aminoacyl-tRNA stability and the fixed amino acid.

Authors:  D Hentzen; P Mandel; J P Garel
Journal:  Biochim Biophys Acta       Date:  1972-10-11
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  48 in total

1.  Structure and mechanism of the tRNA-dependent lantibiotic dehydratase NisB.

Authors:  Manuel A Ortega; Yue Hao; Qi Zhang; Mark C Walker; Wilfred A van der Donk; Satish K Nair
Journal:  Nature       Date:  2014-10-26       Impact factor: 49.962

2.  Role of helix 44 of 16S rRNA in the fidelity of translation initiation.

Authors:  Daoming Qin; Qi Liu; Aishwarya Devaraj; Kurt Fredrick
Journal:  RNA       Date:  2012-01-25       Impact factor: 4.942

3.  A mechanism for functional segregation of mitochondrial and cytosolic genetic codes.

Authors:  Yaiza Español; Daniel Thut; André Schneider; Lluís Ribas de Pouplana
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-30       Impact factor: 11.205

4.  A flexible, scalable method for preparation of homogeneous aminoacylated tRNAs.

Authors:  Jinwei Zhang; Adrian R Ferré-D'Amaré
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

5.  AtaT blocks translation initiation by N-acetylation of the initiator tRNAfMet.

Authors:  Dukas Jurėnas; Sneha Chatterjee; Albert Konijnenberg; Frank Sobott; Louis Droogmans; Abel Garcia-Pino; Laurence Van Melderen
Journal:  Nat Chem Biol       Date:  2017-04-03       Impact factor: 15.040

6.  Decoding on the ribosome depends on the structure of the mRNA phosphodiester backbone.

Authors:  Hannah E Keedy; Erica N Thomas; Hani S Zaher
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-02       Impact factor: 11.205

7.  Identification and characterization of functionally critical, conserved motifs in the internal repeats and N-terminal domain of yeast translation initiation factor 4B (yeIF4B).

Authors:  Fujun Zhou; Sarah E Walker; Sarah F Mitchell; Jon R Lorsch; Alan G Hinnebusch
Journal:  J Biol Chem       Date:  2013-11-27       Impact factor: 5.157

8.  Rapid discovery and evolution of orthogonal aminoacyl-tRNA synthetase-tRNA pairs.

Authors:  Daniele Cervettini; Shan Tang; Stephen D Fried; Julian C W Willis; Louise F H Funke; Lucy J Colwell; Jason W Chin
Journal:  Nat Biotechnol       Date:  2020-04-13       Impact factor: 54.908

9.  Design and properties of efficient tRNA:EF-Tu FRET system for studies of ribosomal translation.

Authors:  Maxim Chudaev; Kiran Poruri; Emanuel Goldman; Hieronim Jakubowski; Mohit Raja Jain; Wei Chen; Hong Li; Sanjay Tyagi; Wlodek Mandecki
Journal:  Protein Eng Des Sel       Date:  2013-02-26       Impact factor: 1.650

10.  Contribution of ribosomal residues to P-site tRNA binding.

Authors:  Shinichiro Shoji; Nimo M Abdi; Ralf Bundschuh; Kurt Fredrick
Journal:  Nucleic Acids Res       Date:  2009-05-05       Impact factor: 16.971

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