Literature DB >> 18237287

Anatomical ontologies of mosquitoes and ticks, and their web browsers in VectorBase.

P Topalis1, C Tzavlaki, K Vestaki, E Dialynas, D E Sonenshine, R Butler, R V Bruggner, E O Stinson, F H Collins, C Louis.   

Abstract

VectorBase, an integrated, relational database that manages genomic and other genetic/biological data pertaining to arthropod vectors of disease, has recently embarked on the construction of ontologies and controlled vocabularies (CVs). It aims, thus, at providing all necessary tools for the complete annotation of vector genomes and, in particular, the annotation of functional genomic data. This task was initiated with the development of anatomical ontologies of mosquitoes and ticks, both of which were made compliant to CARO, the common anatomy reference ontology. The ontologies are complemented by the development of novel web-based browsers that can show figures for anatomical terms, something that is especially helpful for fully illustrating the controlled vocabularies of anatomy.

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Year:  2008        PMID: 18237287     DOI: 10.1111/j.1365-2583.2008.00781.x

Source DB:  PubMed          Journal:  Insect Mol Biol        ISSN: 0962-1075            Impact factor:   3.585


  12 in total

1.  A set of ontologies to drive tools for the control of vector-borne diseases.

Authors:  Pantelis Topalis; Emmanuel Dialynas; Elvira Mitraka; Elena Deligianni; Inga Siden-Kiamos; Christos Louis
Journal:  J Biomed Inform       Date:  2010-04-02       Impact factor: 6.317

2.  An ontology-based comparative anatomy information system.

Authors:  Ravensara S Travillian; Kremena Diatchka; Tejinder K Judge; Katarzyna Wilamowska; Linda G Shapiro
Journal:  Artif Intell Med       Date:  2010-12-10       Impact factor: 5.326

3.  Ontology for vector surveillance and management.

Authors:  Saul Lozano-Fuentes; Aritra Bandyopadhyay; Lindsay G Cowell; Albert Goldfain; Lars Eisen
Journal:  J Med Entomol       Date:  2013-01       Impact factor: 2.278

4.  A gross anatomy ontology for hymenoptera.

Authors:  Matthew J Yoder; István Mikó; Katja C Seltmann; Matthew A Bertone; Andrew R Deans
Journal:  PLoS One       Date:  2010-12-29       Impact factor: 3.240

5.  IDOMAL: an ontology for malaria.

Authors:  Pantelis Topalis; Elvira Mitraka; Ioana Bujila; Elena Deligianni; Emmanuel Dialynas; Inga Siden-Kiamos; Marita Troye-Blomberg; Christos Louis
Journal:  Malar J       Date:  2010-08-10       Impact factor: 2.979

6.  VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics.

Authors:  Karine Megy; Scott J Emrich; Daniel Lawson; David Campbell; Emmanuel Dialynas; Daniel S T Hughes; Gautier Koscielny; Christos Louis; Robert M Maccallum; Seth N Redmond; Andrew Sheehan; Pantelis Topalis; Derek Wilson
Journal:  Nucleic Acids Res       Date:  2011-12-01       Impact factor: 16.971

7.  Describing the breakbone fever: IDODEN, an ontology for dengue fever.

Authors:  Elvira Mitraka; Pantelis Topalis; Vicky Dritsou; Emmanuel Dialynas; Christos Louis
Journal:  PLoS Negl Trop Dis       Date:  2015-02-03

8.  Matching arthropod anatomy ontologies to the Hymenoptera Anatomy Ontology: results from a manual alignment.

Authors:  Matthew A Bertone; István Mikó; Matthew J Yoder; Katja C Seltmann; James P Balhoff; Andrew R Deans
Journal:  Database (Oxford)       Date:  2013-01-09       Impact factor: 3.451

9.  MIRO and IRbase: IT tools for the epidemiological monitoring of insecticide resistance in mosquito disease vectors.

Authors:  Emmanuel Dialynas; Pantelis Topalis; John Vontas; Christos Louis
Journal:  PLoS Negl Trop Dis       Date:  2009-06-23

10.  VectorBase: a data resource for invertebrate vector genomics.

Authors:  Daniel Lawson; Peter Arensburger; Peter Atkinson; Nora J Besansky; Robert V Bruggner; Ryan Butler; Kathryn S Campbell; George K Christophides; Scott Christley; Emmanuel Dialynas; Martin Hammond; Catherine A Hill; Nathan Konopinski; Neil F Lobo; Robert M MacCallum; Greg Madey; Karine Megy; Jason Meyer; Seth Redmond; David W Severson; Eric O Stinson; Pantelis Topalis; Ewan Birney; William M Gelbart; Fotis C Kafatos; Christos Louis; Frank H Collins
Journal:  Nucleic Acids Res       Date:  2008-11-21       Impact factor: 16.971

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