Literature DB >> 18232826

Denaturation transition of stretched DNA.

Andreas Hanke1, Martha G Ochoa, Ralf Metzler.   

Abstract

We generalize the Poland-Scheraga model to consider DNA denaturation in the presence of an external stretching force. We demonstrate the existence of a force-induced DNA denaturation transition and obtain the temperature-force phase diagram. The transition is determined by the loop exponent c, for which we find the new value c = 4 nu-1/2 such that the transition is second order with c = 1.85 < 2 in d = 3. We show that a finite stretching force F destabilizes DNA, corresponding to a lower melting temperature T(F), in agreement with single-molecule DNA stretching experiments.

Mesh:

Substances:

Year:  2008        PMID: 18232826     DOI: 10.1103/PhysRevLett.100.018106

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  7 in total

1.  DNA stretching as a probe for nucleic acid interactions: Reply to Comments on "Biophysical characterization of DNA binding from single molecule force measurements" by Kathy R. Chaurasiya, Thayaparan Paramanathan, Micah J. McCauley, Mark C. Williams.

Authors:  Micah J McCauley; Kathy R Chaurasiya; Thayaparan Paramanathan; Ioulia Rouzina; Mark C Williams
Journal:  Phys Life Rev       Date:  2010-09-01       Impact factor: 11.025

2.  A three-state model with loop entropy for the overstretching transition of DNA.

Authors:  Thomas R Einert; Douglas B Staple; Hans-Jürgen Kreuzer; Roland R Netz
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

3.  Force-driven separation of short double-stranded DNA.

Authors:  Dominik Ho; Julia L Zimmermann; Florian A Dehmelt; Uta Steinbach; Matthias Erdmann; Philip Severin; Katja Falter; Hermann E Gaub
Journal:  Biophys J       Date:  2009-12-16       Impact factor: 4.033

4.  Secondary structure formation of homopolymeric single-stranded nucleic acids including force and loop entropy: implications for DNA hybridization.

Authors:  T R Einert; H Orland; R R Netz
Journal:  Eur Phys J E Soft Matter       Date:  2011-06-01       Impact factor: 1.890

5.  Stacking interactions in denaturation of DNA fragments.

Authors:  M Zoli
Journal:  Eur Phys J E Soft Matter       Date:  2011-07-14       Impact factor: 1.890

6.  Mesoscopic models for DNA stretching under force: New results and comparison with experiments.

Authors:  Manoel Manghi; Nicolas Destainville; John Palmeri
Journal:  Eur Phys J E Soft Matter       Date:  2012-10-29       Impact factor: 1.890

7.  Stability of double-stranded oligonucleotide DNA with a bulged loop: a microarray study.

Authors:  Christian Trapp; Marc Schenkelberger; Albrecht Ott
Journal:  BMC Biophys       Date:  2011-12-13       Impact factor: 4.778

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.