Literature DB >> 18227121

GenomeVx: simple web-based creation of editable circular chromosome maps.

Gavin C Conant1, Kenneth H Wolfe.   

Abstract

UNLABELLED: We describe GenomeVx, a web-based tool for making editable, publication-quality, maps of mitochondrial and chloroplast genomes and of large plasmids. These maps show the location of genes and chromosomal features as well as a position scale. The program takes as input either raw feature positions or GenBank records. In the latter case, features are automatically extracted and colored, an example of which is given. Output is in the Adobe Portable Document Format (PDF) and can be edited by programs such as Adobe Illustrator. AVAILABILITY: GenomeVx is available at http://wolfe.gen.tcd.ie/GenomeVx

Mesh:

Year:  2008        PMID: 18227121     DOI: 10.1093/bioinformatics/btm598

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  137 in total

1.  The complete chloroplast genome of colchicine plants (Colchicum autumnale L. and Gloriosa superba L.) and its application for identifying the genus.

Authors:  Pham Anh Thi Nguyen; Jung Sung Kim; Joo-Hwan Kim
Journal:  Planta       Date:  2015-04-23       Impact factor: 4.116

2.  Novel genetic code and record-setting AT-richness in the highly reduced plastid genome of the holoparasitic plant Balanophora.

Authors:  Huei-Jiun Su; Todd J Barkman; Weilong Hao; Samuel S Jones; Julia Naumann; Elizabeth Skippington; Eric K Wafula; Jer-Ming Hu; Jeffrey D Palmer; Claude W dePamphilis
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-31       Impact factor: 11.205

3.  Recurrent Methicillin-Resistant Staphylococcus aureus Cutaneous Abscesses and Selection of Reduced Chlorhexidine Susceptibility during Chlorhexidine Use.

Authors:  Ryan C Johnson; Carey D Schlett; Katrina Crawford; Jeffrey B Lanier; D Scott Merrell; Michael W Ellis
Journal:  J Clin Microbiol       Date:  2015-08-19       Impact factor: 5.948

4.  Completion of the mitochondrial genome sequence of onion (Allium cepa L.) containing the CMS-S male-sterile cytoplasm and identification of an independent event of the ccmF N gene split.

Authors:  Bongju Kim; Kyunghee Kim; Tae-Jin Yang; Sunggil Kim
Journal:  Curr Genet       Date:  2016-03-26       Impact factor: 3.886

5.  Genome sequencing and analysis of a granulovirus isolated from the Asiatic rice leafroller, Cnaphalocrocis medinalis.

Authors:  Shan Zhang; Zheng Zhu; Shifeng Sun; Qijin Chen; Fei Deng; Kai Yang
Journal:  Virol Sin       Date:  2015-12-18       Impact factor: 4.327

6.  Genome Characteristics of the Cyclophragma Undans Nucleopolyhedrovirus: A Distinct Species in Group I of Alphabaculovirus.

Authors:  Zheng Zhu; Jun Wang; Qianran Wang; Feifei Yin; Xiaoping Liu; Dianhai Hou; Lei Zhang; Haizhou Liu; Jiang Li; Basil M Arif; Hualin Wang; Fei Deng; Zhihong Hu; Manli Wang
Journal:  Virol Sin       Date:  2018-08-28       Impact factor: 4.327

7.  Mosaic structure of Mycobacterium bovis BCG genomes as a representation of phage sequences' mobility.

Authors:  Olga L Voronina; Marina S Kunda; Ekaterina I Aksenova; Andrey N Semenov; Natalia N Ryzhova; Vladimir G Lunin; Alexandr L Gintsburg
Journal:  BMC Genomics       Date:  2016-12-28       Impact factor: 3.969

8.  The complete plastid genomes of the two 'dinotoms' Durinskia baltica and Kryptoperidinium foliaceum.

Authors:  Behzad Imanian; Jean-François Pombert; Patrick J Keeling
Journal:  PLoS One       Date:  2010-05-19       Impact factor: 3.240

9.  Complete chloroplast genome sequence of a tree fern Alsophila spinulosa: insights into evolutionary changes in fern chloroplast genomes.

Authors:  Lei Gao; Xuan Yi; Yong-Xia Yang; Ying-Juan Su; Ting Wang
Journal:  BMC Evol Biol       Date:  2009-06-11       Impact factor: 3.260

10.  Mitochondrial phylogenomics of the Bivalvia (Mollusca): searching for the origin and mitogenomic correlates of doubly uniparental inheritance of mtDNA.

Authors:  Hélène Doucet-Beaupré; Sophie Breton; Eric G Chapman; Pierre U Blier; Arthur E Bogan; Donald T Stewart; Walter R Hoeh
Journal:  BMC Evol Biol       Date:  2010-02-18       Impact factor: 3.260

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.